NPS@ : MULTALIN ALIGNMENT

NPS@ is the IBCP contribution to PBIL in Lyon, France

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Monday, January 28th 2002 : 2,000,000 analysis have been carried out with NPS@ including 400,000 Clustal W (see statistics)

Job SHOWALN (ID: 29352) is running on NPS@ server (started on Fri May 10 17:36:11 CEST 2002).
Results will be shown below. Please wait and don't go back.

MULTALIN multiple alignment

Abstract F. CORPET Multiple sequence alignment with hierarchical clustering , 1988, Nucl. Acids Res., 16 (22), 10881-10890 [HELP]

alignment with width :
residues.
Conservation level of % (works with "using conservation level of" option in list above).

View MULTALIN in: [MPSA (Mac, UNIX) , About...] [AnTheProt (PC) , Download...] [HELP]


                     10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
                      |         |         |         |         |         |         |         |         |         |         |         |         |         |         |         |         |         |
HCS1xx0      -------------CAATGGATTGGTAATTAAGTGGCTAGAGTGGTCATTCATTTACACTGTATTTGTTACCTGAGGAAAAATTTACTAAGTTGAA-GCTTTCGTTTTTAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTT-------------
HCP21x1      -----------TTACCAAAAAAAGTCAGTTAAAAGTTACAGAATTCAGAGAGTGCGGACGTCCAGTTTCGCAGTGGGAGTCTTCA-T-TGCGCCA-GTGACTAAAAAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTT-------------
HCP15x2      ----------GAAACCCCATCTCCACTAAAAATATAAAAACTA--GAGAGAGTGGGGACGTCCGGCTTCAGAGCGGGAGTCTTCG-T-TGCGCCA-GCGACTAAAAAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTTA------------
HCP45x4      ------------ATACACATTTGGATTTGGTTTAGAAAAATTTTTGTGAGAGTGGGGACGTCCAGCTTCGGAGCGGGAATCTTCG-C-TGCGCCA-GCGACTAAAAGGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTTA------------
HCP39x22     -----------ATACCACCATTTCTCTAAAAAAAAGGGGAGATACGAGAGACTGGAGACGTCCAGCTTCAGAGCAGGAACCTTAG-T-TGCGCCA-GCAACGAAAAACAGAACTAAATAT-------------------GGGTGATGTTGAGAAAAGCAAGAAGATTTTT-------------
HCSxxx3      ------------------------------------------GGGGAGAGAGTGGGGACGTCCGGCTTCGGAGCGGGAGTGTTCG-T-TGTGCCA-GCGACTAAAAAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTT---------------
HCP16x8      ----------CTGACAATGGAAAACAAAACATAAGAATCAGCAATGCTTGAGTGG-GACATCCAACTTCTGAGTAGAAACCTTTG-T-GGCACCA-GTGAAAAAAAATAGAATTAAATAC-------------------GGGTGATGTTTAGAAAGGCAAGAAGATTTTT-------------
HCP10x17     -------ACAACCAAAAGGACAAGCAACAACAACAAAAAAAGTAA---AGAGTGG-GTTGTCCGGCTTTGGAGTGGCAACCTTCG-T-GGCCCCA-GGGACTAAAAAGAGAATTAAATAC-------------------AAGTGATGTTGAGAAAAGCAAGATTTTTGTTCAG----------
HCP13x23     ----------ACCAAAAGGACAAGCAACACAAGAAAACAAATTGATAGAGAGTGG-GTCGTACAGCTTTGGAGTGGCAACCTTTG-T-GGCGCCA-GCGATGAAAAAGAGAATTAAATAT-------------------GGGTGATGCTGAGAAAGGCAAGAAGATTTTT-------------
HCP12x24     ----------ACCAAAAGGACAAGCAACACAAGAAAACAAATTGATAGAGAGTGG-GTCGTACAGCTTTGGAGTGGCAACCTTTG-T-GGCGCCA-GCGATGAAAAAGAGAATTAAATAT-------------------GGGTGATGCTGAGAAAGGCAAGAAGATTTTT-------------
HCP11x25     ----------ACCAAAAGGACAAGAAACACAAGAAAAAAAATTGATAGAGAGTGG-GTCGTACAGCTTTGGAGTGGCAACCTTCG-T-GGTGCCA-GCGATGAAAAACAGAATTATATAT-------------------GGGTGATGCTGAGAAAGGTAAGAAGATTTTT-------------
HCP1xx13     -----------TCCGTCTCAAAAAAAAAAAAAAATTGCCTTTATGGAGAGAGTGG-GATGTCCGGCTTCAGAGTGGTAACCTACG-T-TGCACCA-GTGATGAAAAAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTTG------------
HCP36x16     -----------TTGTGATCTTAATATCTGATAAAAGATATGTATCTAGAGAGTGG-GACGTCCGGCTTCAGAATGGGAACCTTCG-T-TGCCCCA-GCGATGAAACAGAGAATTAAATAT-------------------GAGTGATGCTGAGAAAGGCAAGATTTTTGTTCAGA---------
HCP28x41     -----------AAAGGTAGGTTAATGGATACAAAAAGTAGAGCTAGAGAGAGTGT-GATGTCCAGCTTCCAAATGGGAACCTTTG-T-AGCACCA-GTGACAAAAAAGAGAATTAAATAT-------------------AGGTGATGCTGAGAAAGGCAAGAAGACTTTTG------------
HCP22x14     ----------GGTAGGAGGGGAAAACATTTAAAAATAGCTAAGGCAATAGAGTGT-GACGTCTGGCTTCGGAGCAGGAACCTTCA-T-TGCTCAA-GAGACTTAAAAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATCTTT-------------
HCP6xx32     ----------TCTTCTTCCATCACTCCTTTAGAAAATGTTTGTGGCAGGGAGTGG-GACATCCGGCTTCAGAGCAGGAACTTTCA-T-TGCACCA-GTGATGAAAAAGAGAATGAAATGT-------------------GGGTGACGTTGAGAAAGGCAAGAAGATTTTT-------------
HCP29x11     --------ATCCTTGAAGGAATTCATTTTTAGAAGTGTAATTTTCAAAAGAGCGG-GACATCCAGCTTCAGAGAGGGAACCTTCG-T-AGCACCA-GTGATGGAAGA--GAATTAAATAT-------------------GGGTGTTGCTGAGAAAGGCAAGAAGATTTTT-------------
HCP31x30     --------GTGCAAATATATTTGACTATTAAATTATCTCTGTTTTGAGAGAGTGG-GACGTCCGGCTTCGGGGTAGGAACCTTCG-T-TGCGCCA-GCGACAAAAAA--GAATTAAATAT-------------------GGGTGATGTTGAGAAGGGCAAGAAGATTTTT-------------
HCP24x31     ---------TGCAAATATATTTGACTATTAAATTATCTCTGTTTTGAGAGAGTGG-GACGTCCGGCTTCGGGGTAGGAACCTTCG-T-TGCGCCA-GCGACAAAAAA--GAATTAAATAT-------------------GGGTGATGTTGAGAAGGGCAAGAAGATTTTTG------------
HCP49x5      -------AGTCGATGATAGATTGGATAAAGAAAATATGGTACATAGAG----TGG-GACATCGGGCTTCTGAGCGGGAACCTTTG-T-AGTGCCA-GTGATGAAAGAGAGAATTAAATAT-------------------GGCTGATTCTGAGAAAGGCAAGAAAATTTTTCTTC---------
HCP41x6      ------CAGTCGATGATAGATTAGATAAAGAAAATATGGTACATAGAG----CGG-GACATCTGGCTTCTGAGCGGGAACCTTTG-T-AGTGCCA-GTGATGAAAGAGAGAATTAAATAT-------------------GGGTGATGCTGAGAAAGGCAAGAAAATTTTT-------------
HCP32x7      ------CAGTCGATGATAGATTGGATAAAGAAAATATGGTACATAGAG----TGG-GATGTCTGGCTTCTGAGCGGGAATCTTTG-T-AGTGCCA-GTGATGAAAGAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAAATTTTT-------------
HCP34x12     -----------AATGATAGATTGGATAATGAAAATGTGGTACATAGAGAGAATGG-GACATCTGGCTTCCGAGCAGAAACCTTTG-T-AGTGCCA-GCGATGAAAGAGATAATTAAATAC-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTTG------------
HCP43x42     -------AGTAGATGATA---TGACTAAATGAATAGTATGTCAGAGAGAGGGCAG-GACGTCTGGCTTCCCAGCGGGAACCTTCA-T-AGTGCCA-GCAATAAAAGAGAGAATTAAATGT-------------------GGGTGATGTTGAGAAAGGCAAGAAGATTTTT-------------
HCP2xx21     -----------TCTGCAGGACTTTTTTTTTTTTAAGCCACTGATTTAGAGAGCAG-GACGTCTGGCTTCCGAGCAGGAACCTTCA-T-ATTGCCA-GTGATGAAAGAGAGAATTAAATAC-------------------GGGTGATATTGAGAAAGGCAAGAAGATTTGTG------------
HCP19x10     -----------AGCCCAACTTTTTTGTTGACTCGAAAAGAATATACAGAGAGTGT-GACATCCAGCTTCTGAGTGTCATCCTTCA-T-AGCACAA-GCAACAAAAGAGAGGATTAAATAT-------------------GGATGATGTTGAGAAAGGCAAGAAGATTTGTATTC---------
HCP20x18     ----------ATATAGAATGTTCTTAACACAAAGAAATGAAAAATGAGAGAGCAG-GACATCTGGTTTCTGAGTAGGAACCTTCA-C-AGTGCCA-GTGACAAAAGAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAAGCACGAATATTTGT-------------
HCP27x20     -----------TTTCCCAAAAAAAAAAAAAAAAAAAAAAAAAGTACACAGAGCGG-GACGTCCGGCTTCTGAGTGGGAACCTTCC-T-AGCGCCA-GCGACAAAAGAGAGAATTAAATAT-------------------GGGTGATATTGAGAAAGGCAAGAGTATTTGTA------------
HCP23x34     ----------GAAAGAGACCCCCTCTAAAAAAAAAAAAGGCATCCAAGGCAGTGG-GACATCTGGCTTCTGAATGGGAACCTTTA-T-AGCACCA-GCAACCAAAGAGAGAATTAAATAT-------------------GGGTGATGTTGAAAAAGGCAAGAGAATTTTT-------------
HCP5xx26     ----------CCGGGCATTCCAACACTAAGAGGTCAGGGAGATCTCAGAGAGCCA-GATGTCAAGCTTCTGAGCGGGAACCTTTG-T-AGTGCGA-GCAACAAAAGAGAGAATTAAATAT-------------------GGGTGATGTTGAAAAAAGCAAAAGTGTTTTT-------------
HCP17x37     -----------CAATGAATTGTTAAGTGCTACCAATTACACAAAGGATAGAACAG-GATGTCTGGCTTCCAAGTGGGAACCTTTG-C-AGTGCAA-GGAATAAAAGACAGAATTAAATAT-------------------GAGTGATGTTGAGAAAGGCAAAAAGATTTTTATTC---------
HCP25x15     -----TGAAATTCTATATGCTAGTGACAATTAGAAAGTGAAATTTAAGGAGAATGGGACGTCTAGCTTCAGAGCGGGAACCTTCG-T-T-------GTGACGAAAAAGGGAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGAGTTTT-------------
HCP38x27     ------------ATCAGAAATTTTATTTTAAAATTTATTAGAAATTTGGAGAGCAGGATGTTTGGCCTCTGAATGGGAACCTTAG-T-AGTGCCA-ATGACGAAAGAGAGAATTAAATAT-------------------GGGTGATGTTGAGAAAACCAAGATTTTTGTCT------------
HCP40x38     --------TATACATACTGCATTTAAATAAAAAGTTAGAATAAAGA--GAGAGCAGGACACCTGGCTTCTGAATGGAAACCTTCG-T-AGTGCCA-GAGACAAAAGAGA--ATTAAACAT-------------------GGATGATGTTGAGAAAGGCAAGATTTTTGTTCCAA---------
HCP26x28     -----------ACACTTCAATGATCTAACTTCAGGAATACCTACTGAGGAGAGCGGGACATCCGGCTTCTGAGTAGGAAGCTCCG-T-AATGCCA-GCAATGAAAGAGAAAATTAAATAT-------------------GGGTGATGTTGAGAAAGGCAAGATTTTTGTT-------------
HCP7xx29     --------GTTTCCCATTTGAGATATTCTTTCAAGAATATCTCAAGA----AGCAGGACATCCAGCTTCTGAGCAGGAACCTTCA-T-AATGCCA-GCAACAAAAGAGAAAATTAAATAT-------------------GAGTGATGTTGAGAAAGGCAATAAGATTTTTGTTC---------
HCP44x33     --------GGTATTCTGTTATAGCAGCACAAAATTAAGTAAGACAGGATAGAGAGGGACATCTGGCTTCCGAGCGGGAACCCTCA-T-AGCCCCA-GCGACAAAAGA----ATTAAACAT-------------------GGGTGATGTTGAGAAAGGCAAGAAGGTTTTTG------------
HCP8xx39     -----------TACTATAAAGCTATGTAATCACAACAAGGTGCTATTAAGAGAAGCATTAGCCAGCTTCCAAGCGGGAATCTTCA-T-AGTGTGA-GTGATAAAGGAGAGAATTTAACAG-------------------GAGTAACGTAGTAAAAGGCAAGAAGATTTTGTTC----------
HCP33x9      ------------------------------TAAAGAAAATGTGGAACATAGAGCAGGACGTGTGGCTTCTGAGCGAGAACATTTG-T-AGTGCCA-GTGACGAAAGAGAGAATTTGAGAGATATTGAGATGTTGAGAAAGAGAGATGTTGAGAAAGGCAAGAAGATTTTTGTT----------
HCP30x35     ------ATATTGGGAGGTAAGTAAATTTAAGACATATTTAGATTAGAGAGCAGGATGCCCAGTTTCTGAGCAGAAGAAACATTCG-TTAGCTCCA-GCTATGCAAGAGAGAATTACATAT-------------------GAGTGATGTTGAGAAAAGATTTTTGTTCAGAATTGTGCACCGT-
HCP3xx40     ------ATCAATTTGTCACATTCCCCTCAAAATCCAGCTGGAGTCCTGGAGAGTGGGCTGTCCCGCTTCCGAGTGGGAACGTTCA-T-AGTGTCG-TTGATGAGAGATTAAATAT------------------------GGGTGATGTTGAGAAAGGCAGAAGACTTTTG-------------
HCP37x19     CATGGATTGCCTCATTTATATCTAACAACACTATAAAGTAGACACTGATAGAGCAGGACGTCCATCCTCAGAACCGGAACCTTTG-------------TACAAAACAGATAATTAAATA-------------------AGGGTGATGTTGAAAAA--CAAGAATATGTGTGCTCAGAAGCACG
HCP42x45     --------------GGCAATGATACAGTGGCTGAAAACGTGTCTGGGACTGAGCAGAACATTGAGCTTCCACCAGGAAGCTTCTATTGCATGCAATGCAATGACAGAGCAAATTAAAAAT-------------------AAATAAAGCTCCGAAGGGCAAGGGAGTTTTTGTTCAGAACTAT-
HCP35x36     --------GCTACTCAGGAGGCTGAGGCAGGAGAATTGCTTGAACCTGGGAGGCGGAGGTTGCAGTGAACCGAGATCACACATTGCACTCTAGCCTGCGCGACAAGAGAGACTCCA-----------------------TCTCAAAAAAAAAAAAAAAACAAACAAACAAAAAACGG------
HCP18x43     -----------TGTTATAAAATAAACATAAAAAATCTATATCCAGTGAGCAGGAGTGATGTCATGGGGTGAGCAGGGCTGAGTGTGGAACCTTGCTGAGATGCTCAGGCAGAGCTG-----------------------AGTTCAGTGTGGAGAAGGGCAAGACTTTTGTCAGAAGT------
HCP14x44     --------CATTGTGAAATAATGTAAATTCAGCCTCTACTTCACATATAAAGGTGCAGAGTCCACAGA--AAGCTGTCTAAATACATGCTTGGGGTGGGTCTCTGATACCAATTGT-----------------------TGTTGATGCTGAGAGAGGCAAGGACGTTTTTTTT----------
HCP9xx46     ----------TTCACTTCAGTCAAAATGATGGAATTCTTTTTTCTCCCCGGCTTTGAAAATCTAATATATATATTTTTTTGGTTTGTGGTTTTAATGTTCCATTGCAGAGCAACAT-----------------------GGGAGATGCTGAAGCAGGCAAGAAGACCTTT-------------
Consensus                       a    a a a aaaa a          agagagtgg gacgTccggctTc gag gGgAacctTcg t ag gcca G gAc aaagAgagaATtaaatat                   gggTGAtgtTGAgAAAgGCAAgAagaTtttt             
Prim.cons.   CATGG22AGTTTA2GAAAGATTAAATAAAAAAAAAAAAAAATATAGAGAGAGTGGGGACGTCCGGCTTCTGAGTGGGAACCTTCG2TGAGTGCCATGCGACGAAAGAGAGAATTAAATATATATTGAGATGTTGAGAAAGGGTGATGTTGAGAAAGGCAAGAAGATTTTTGTTCAGAACCATG

Alignment data :
Alignment length : 183
Residues conserved for 90 % or more (upper-case letters) : 25 is 13.66 %
Residues conserved for 50 % and less than 90 % (lower-case letters) : 80 is 43.72 %
Residues conserved less than 50 % (white space) : 78 is 42.62 %
IV conserved positions (!) : 0 is 0.00 %
LM conserved positions ($) : 0 is 0.00 %
FY conserved positions (%) : 0 is 0.00 %
NDQEBZ conserved positions (#): 0 is 0.00 %
Sequence 0001 : HCS1xx0 ( 137 residues).
Sequence 0002 : HCP21x1 ( 137 residues).
Sequence 0003 : HCP15x2 ( 137 residues).
Sequence 0004 : HCP45x4 ( 137 residues).
Sequence 0005 : HCP39x22 ( 137 residues).
Sequence 0006 : HCSxxx3 ( 104 residues).
Sequence 0007 : HCP16x8 ( 137 residues).
Sequence 0008 : HCP10x17 ( 140 residues).
Sequence 0009 : HCP13x23 ( 137 residues).
Sequence 0010 : HCP12x24 ( 137 residues).
Sequence 0011 : HCP11x25 ( 137 residues).
Sequence 0012 : HCP1xx13 ( 137 residues).
Sequence 0013 : HCP36x16 ( 140 residues).
Sequence 0014 : HCP28x41 ( 137 residues).
Sequence 0015 : HCP22x14 ( 137 residues).
Sequence 0016 : HCP6xx32 ( 137 residues).
Sequence 0017 : HCP29x11 ( 137 residues).
Sequence 0018 : HCP31x30 ( 137 residues).
Sequence 0019 : HCP24x31 ( 137 residues).
Sequence 0020 : HCP49x5 ( 140 residues).
Sequence 0021 : HCP41x6 ( 137 residues).
Sequence 0022 : HCP32x7 ( 137 residues).
Sequence 0023 : HCP34x12 ( 137 residues).
Sequence 0024 : HCP43x42 ( 137 residues).
Sequence 0025 : HCP2xx21 ( 137 residues).
Sequence 0026 : HCP19x10 ( 140 residues).
Sequence 0027 : HCP20x18 ( 137 residues).
Sequence 0028 : HCP27x20 ( 137 residues).
Sequence 0029 : HCP23x34 ( 137 residues).
Sequence 0030 : HCP5xx26 ( 137 residues).
Sequence 0031 : HCP17x37 ( 140 residues).
Sequence 0032 : HCP25x15 ( 137 residues).
Sequence 0033 : HCP38x27 ( 137 residues).
Sequence 0034 : HCP40x38 ( 140 residues).
Sequence 0035 : HCP26x28 ( 137 residues).
Sequence 0036 : HCP7xx29 ( 140 residues).
Sequence 0037 : HCP44x33 ( 137 residues).
Sequence 0038 : HCP8xx39 ( 140 residues).
Sequence 0039 : HCP33x9 ( 140 residues).
Sequence 0040 : HCP30x35 ( 155 residues).
Sequence 0041 : HCP3xx40 ( 137 residues).
Sequence 0042 : HCP37x19 ( 149 residues).
Sequence 0043 : HCP42x45 ( 149 residues).
Sequence 0044 : HCP35x36 ( 146 residues).
Sequence 0045 : HCP18x43 ( 143 residues).
Sequence 0046 : HCP14x44 ( 140 residues).
Sequence 0047 : HCP9xx46 ( 137 residues).

MULTALIN options used :
c=dna
g=5
k1=90
k2=50
order=optA
s=abs

Result files (text) :
MULTALIN

User : public@130.132.17.108. Last modification time : Fri May 10 17:36:12 2002. Current time : Fri May 10 17:36:12 2002 This service is supported by Ministere de la recherche (ACC-SV13), CNRS (IMABIO, COMI, GENOME) and Région Rhône-Alpes (Programme EMERGENCE) . Comments.