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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 342 Check: 0 ..
Name: MRP63 Len: 342 Check: 6054 Weight: 0.84
Name: MRP63P6 Len: 342 Check: 8827 Weight: 0.84
Name: MRP61P1 Len: 342 Check: 8689 Weight: 0.98
Name: MRP63P7 Len: 342 Check: 2405 Weight: 0.95
Name: MRP63P8 Len: 342 Check: 5777 Weight: 0.95
Name: MRP63P4 Len: 342 Check: 6226 Weight: 0.81
Name: MRP63P5 Len: 342 Check: 7353 Weight: 0.81
Name: MRP63P10 Len: 342 Check: 6313 Weight: 0.82
Name: MRP63P2 Len: 342 Check: 1696 Weight: 1.32
Name: MRP63P3 Len: 342 Check: 6875 Weight: 1.34
Name: MRP63P9 Len: 342 Check: 4309 Weight: 1.34
Name: Consensus Len: 342 Check: 8333 Weight: 0.00
//
1 130
MRP63 ATGTTCCTG ACTGCGCTCC TCTGGCGCGG CCGCATTCCC GGCCGTCAGT GGATC-GGGA AGCACCGGCG GCCGCGGTTC GTGTCGTTGC GCGCCAAGCA GAACATGATC CGCCGCCTGG
MRP63P6 GGCAGGCAC CATGTTTCTG ACCACCCTCT TCATCCGTAC TCACATACCT GCTAGACAGT GGATC-GGGA TGCACTGGTG GCTGCTGCCC CT--CATTGC ACACCAAGCA GAACATGATC TATTGCCTAC
MRP61P1 ATGCAGGCAC CATGTCCTTG ACTGCCCTCC TCTGCTGCAA TCACATTTCT GGTAGGCAGT GGATCAGGGA AGCACCAGCA GCTGT----- ---------- -------G-- AACCATG--- ----------
MRP63P7 CAGGCTC CAAGTTCCTG ACTGCCCTCC TCTGTTGCTG TGGCATTCCT GGAAGGCAGT GGATC-TGGA AGCACTGGCG GCCGC----- ---------- -------GCT GCAGACC--- ----------
MRP63P8 CCACATGCAC CATGTTCCTG ACTGCCTTCC TCTGCTGCAG TCGCATTCCT GGCAGGCAGT GGACT-GGGA AACACCAGTG GTCGC----- ---------- -------A-- GACTGTA--- ----------
MRP63P4 CTGCTACAA TTGCATTTCT GGCAGGCAGT GGATCAGGGA AGCACCGGCA GTTGA----- ---------- ---------G GACCATG--- ----------
MRP63P5 TCTGCTACAA TTGCATTTCT GGCAGGCAGT GGATCAGGGA AGCACTGGCA GTTGA----- ---------- ---------G GACCATG--- ----------
MRP63P10 CTGCTACAA TTGCATTTCT GGCAGGCAGT GGATCAGAGA AGCACTGGCA GTTGA----- ---------- ---------G GACGATG--- ----------
MRP63P2 TTTTG GACCATG--- ----------
MRP63P3 TT GGTCATC--- ----------
MRP63P9 G GACCGTG--- ----------
Consensus .......... .......... .......... .ctg...c.. t..catt.ct gg.ag.cagt ggatc.ggga agcac..g.. g..g...... .. ...... .......... GaccaTg... ..........
131 260
MRP63 AGATCGAGGC GGAGAACCAT TACTGGCTGA GCATGCCCTA CATGACCCGG GAGCAGGAGC GCGGCCACGC CGC---GGTG CGCAGGAGGG AGGCCTTCGA GGCCATAAAG GCGGCCGCCA CTTCCAAGTT
MRP63P6 AGATCAGGGT GGAAAATCAC TACTGGCTGT AAATACCCTA -TTGACCTTG GAGCAGCAGC ATGGCCATGC TGCTGCAGTG TGCAGGGCAG AGGCCATGGA GCCCATGAAG GTGGCCAATA CTTCCAAGGT
MRP61P1 ---------T GGAGAAACAC TACTGGCCGA GCATGCCCTA CCTGACTGTG GGACAAGAGT ACAGCAGTGC TGA---GGTG CACTTGGCAG AGCCCTTTGA GGCTGTGAAA GCGGCCAATA TTTCCAAGTT
MRP63P7 ---------A TGAGAACTAC TACTGAACAA GCGTGTCCTA TCTGACCACG GGGCAGGAGC ACAACCACGC TGT---GGTG CACAGGGCTG AGGCCTTCCA TGCCGTGAAG GCAGTCAACA CTTCCAAGTT
MRP63P8 ---------T GGAGAACCT- TACTGGCTGG GCGTGCCCTA TCTGATCACA GGACAGGAGT AAGGTCACAG CAT---GGTG TGCAGAGCTA AGGTCTTCAA GGCCATGAAG GTGGCCAACA CTTCCAAGTT
MRP63P4 ---------T GGAGAACAAC TACTGGCCAA GCATTCCCAA CCTGACAGCA GAACAGGGGT ACAGCAGTGC TGA---GGTG AACTTGACAG AGAAATTTGA GACCATGAAG GCAGCCAACA CTTCCAACTT
MRP63P5 ---------T GGAGAACCAC TACTGGCCAA GCATTACCAA CCTGACAGCA GAACAGGAGT GCAGCAGTGC TGA---GGTG AACTTGACAT AGAACTTTGA GACCATGAAG GCAGCCAACA CTTCCAACTT
MRP63P10 ---------T GGAGAACCAC TACTGGCCAA GCATTCCCAA CCTGACAGCA GAACAGAAGT ACAGCAGTGC TGA---GGTG AACTTGACGG AGAACTTTGA GACCATGAAG GCAACCATCA CTTCCAACTC
MRP63P2 ---------C AGAGAACCAC TACTGGCCAA GCATTCCCAA TCTGACAGCA GAACA---GT ACAGCACTGC TGA---GGTG AACTTGGCAA AGAACTTTGA GACCATGAAG GCAGCCAACA CTTCCAAGTC
MRP63P3 ---------T GGAGAACCAC TACTGGCTGA GCATGCCCTA CCTGACCACA GGGCAGGAGT A-GGCTACAC TGT---AGTG CACAGGGCAG AGGCCTTTGA GGCCATGAAG ACAGCCAACA CTTCCAAGTT
MRP63P9 ---------T GGAGAACCAC AACTAGCTGA GAATGCCCTA CATGACTGCG AGACAGGATT GCAGCCAGGC CAT---GGTG TGCAGGGTGG AGGCCTTAGA GGCCATGATG GTGGCCAGC- -TTCCAAGTT
Consensus .........t gGAGAAccAc tACTgGCcga GcaTgcCCtA ccTGAC.gca ggaCAggagt acaGC.atgC tg. gGTG .aCagGgcag AGgcCTTtgA GgCCaTGAaG gcaGCCAaca cTTCCAAgTt
261 342
MRP63 ----CCCCC- ------CGCA TAGATTCATT GCGGACCAGC TCGACCATCT CAATGTCACC AAGAAATGGT CCTAA
MRP63P6 ----CCCCC- ------AACA TAGATCTGTT GTAGACAAGA TTGACCATCT CAATGTCATC CAGAAATGGT CCTAACTCTG AG
MRP61P1 GCCTCTGTA- ------TAGA TAGATTTGTT ATAAACCAGC TCAGTCATCT CAGTGTCAAC AAGAAGTTGT CATCTTCTTG T
MRP63P7 ----CTGCC- ------CTCA TAGATTTGTT GTAGACCAGC TAAACCATCA CAATGTCACC AAGAAACGGC CCTAA
MRP63P8 ----CT-CC- ------TGTA TATATTTGTT CTAGAGCAGC CCAACCATCT CAACATTACC AAGAAATGGC CCTAACCC
MRP63P4 ATCACAACCT GCCTCTCACA TAGATTTATT GTGGAAGAAC TCAACCATCT CCGTGTCAAC AAGAAATGGT CCTCACTCTA AA
MRP63P5 ATCACAACCT GTCTCTCACA TAGATTTATT GTAGAAGAAC TCAACCATCT CCGTGTCAAC AAGAAATGGT CCTCTAAACC G
MRP63P10 ATCACAACCT GCATCTCCCA CAGATTTATT ATAGAAGAAC TCAACCATCT CTGTGTCAAC AAGAAATGGT CCTCACTCTA CA
MRP63P2 ATCACAACCT GCTTCTCCCA TAGATTTATT GTAGACCATC TCAACCATCT CCATGTCAAC AAGAAATGGT CCTCACTCTA A
MRP63P3 ----CCCCT- ------CACA TAGATTTGTT GTAGACTAGC TCGACCATCT CAATGTCACC AACAAATGGT CCTAACCCTG A
MRP63P9 ----CCTCC- ------CACA TAGATTTGCT GTCGGTCACC TCAACCGTGT AAATGTCACC AAGAAATGGT CCTAACCCTG AG
Consensus ....C..Cc. ......cacA TAGATTTgtT gTaGaccAgC TcaACCaTcT caaTGTCA.C AAgAAATGGt CCTaac.ct. a.