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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1047 Check: 0 ..
Name: MRPL3 Len: 1047 Check: 9484 Weight: 1.00
Name: MRPL3P1 Len: 1047 Check: 8479 Weight: 1.00
Name: Consensus Len: 1047 Check: 348 Weight: 0.00
//
1 130
MRPL3 ATGCCGGGTT GGAGGCTGCT GACGCAGGTC GGCGCCCAGG TGCTGGGTCG ACTCGGGGAC GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAGGT CTTCATGGAA
MRPL3P1 ATCCCGGGTT GGAGGCTGCT GATGCAGGTC GGCGCCCAGG TGCTGGGTCA AGTCGGGGAT GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAAGT CTTCATGGAA
Consensus ATcCCGGGTT GGAGGCTGCT GAcGCAGGTC GGCGCCCAGG TGCTGGGTCa AcTCGGGGAc GGCCTGGGTG CTGCCCTGGG CCCGGGGAAC AGAACACACA TCTGGCTTTT TGTTAGAaGT CTTCATGGAA
131 260
MRPL3 AGAGTGGTAC ATGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT TGGTCTCTGA TGAAGATAAA GCCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT
MRPL3P1 AGAGTGGTAC GTGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT TGGTCTCTGA TGAAGATAAA ACCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT
Consensus AGAGTGGTAC aTGGTGGGAT GAGCATCTTT CTGAAGAAAA TGTCCCATTC ATTAAGCAGT TGGTCTCTGA TGAAGATAAA aCCCAATTAG CAAGTAAACT GTGTCCTCTG AAAGATGAAC CATGGCCTAT
261 390
MRPL3 ACATCCTTGG GAACCAGGTT CCTTTAGAGT TGGTCTTATT GCCTTGAAGC TGGGCATGAT GCCTTTATGG ACCAAGGATG GTCAAAAGCA TGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCTTA
MRPL3P1 GCATCCTTGG GAACCAGGTT CCTTTAGAGT TGG------- -CCTTGAAGC TGGGCATGAT GCCTTTATGG ACCAAGGATG GTCAAAAGCA CGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCCTA
Consensus aCATCCTTGG GAACCAGGTT CCTTTAGAGT TGG....... .CCTTGAAGC TGGGCATGAT GCCTTTATGG ACCAAGGATG GTCAAAAGCA cGTGGTCACA TTACTTCAGG TACAAGACTG TCATGTCcTA
391 520
MRPL3 AAATATACGT CAAAGGAAAA CTGTAATGGA AAAATGGCAA CCCTGTCTGT AGGAGGAAAA ACTGTATCAC GTTTTCGTAA AGCTACATCC ATATTGGAAT TTTACCGGGA ACTTGGATTG CCGCCGAAAC
MRPL3P1 AAATATACTT CAAAGGAAAG CCGTAATGGA AAAACGGCAG CCCTGTCTGT AGGAGGCAAA -CTGTATCAC GTTTTCATAA AGCTACACCT GTATTGGAAT TTTACCGAGA ACTTGGATTG CCGTCAAAAC
Consensus AAATATACgT CAAAGGAAAa CcGTAATGGA AAAAcGGCAa CCCTGTCTGT AGGAGGaAAA .CTGTATCAC GTTTTCaTAA AGCTACAcCc aTATTGGAAT TTTACCGaGA ACTTGGATTG CCGcCaAAAC
521 650
MRPL3 AGACAGTTAA AATCTTTAAT ATAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT ATGCTGCTCA CTTTCGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG
MRPL3P1 AGACAGTTAT AATCTTTAAT GTAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT ATGCTGCTCA CTTTTGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG
Consensus AGACAGTTAa AATCTTTAAT aTAACAGATA ATGCTGCAAT TAAACCAGGC ACTCCTCTTT ATGCTGCTCA CTTTcGTCCA GGACAGTATG TGGATGTCAC AGCCAAAACT ATTGGTAAAG GTTTTCAAGG
651 780
MRPL3 TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACG CATGGTCAAA CGAAAACCCA CAGGAGACCT GGAGCTGTTG CAACTGGTGA TATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA
MRPL3P1 TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACA CATGGTCAAA CGAAAACCCA CAGGAGACCT GGAGATATTT CAACTGGTGA CATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA
Consensus TGTCATGAAA AGATGGGGAT TTAAAGGCCA GCCTGCTACa CATGGTCAAA CGAAAACCCA CAGGAGACCT GGAGaTaTTg CAACTGGTGA cATTGGCAGA GTCTGGCCTG GAACTAAAAT GCCTGGAAAA
781 910
MRPL3 ATGGGAAACA TATACAGGAC AGAATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAAGGTCAAA GATTCTAAAC
MRPL3P1 ATGGGAAACA TATATAGAAC AGTATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAGGGTCAGA GATTCTAAAC
Consensus ATGGGAAACA TATAcAGaAC AGaATATGGA CTGAAAGTGT GGAGAATAAA CACAAAGCAC AACATAATCT ATGTAAATGG CTCTGTACCT GGACATAAAA ATTGCTTAGT AAaGGTCAaA GATTCTAAAC
911 1040
MRPL3 TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACATATTTT CCTGATGGAG ATGAAGAGGA ACTGCCAGAA GATTTGTATG ATGAAAACGT GTGTCAGCCC GGTGCGCCTT CTATTACATT
MRPL3P1 TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACGTATTTT CCTGATGGAG ATGAAGAGGA ACTACCGGAA GATTTGTATG ATGAAAACGT GTGTCAGCCT AGTGTGCCTT CTATTATGTT
Consensus TGCCTGCATA TAAGGATCTC GGTAAAAATC TACCATTCCC TACaTATTTT CCTGATGGAG ATGAAGAGGA ACTaCCaGAA GATTTGTATG ATGAAAACGT GTGTCAGCCc aGTGcGCCTT CTATTAcaTT
1041
MRPL3 TGCCTAA
MRPL3P1 TGCCTAA
Consensus TGCCTAA