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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 458 Check: 0 ..
Name: MRPL30 Len: 458 Check: 2098 Weight: 1.14
Name: MRPL30P1 Len: 458 Check: 6863 Weight: 1.14
Name: MRPL30P2 Len: 458 Check: 9404 Weight: 0.86
Name: MRPL30P3 Len: 458 Check: 3374 Weight: 0.86
Name: Consensus Len: 458 Check: 470 Weight: 0.00
//
1 130
MRPL30 ATGCTGAGAT TACAGGCGCC CGCACCACGC CCAGCCTCTA AAGAGAGCAA TCACTACACT TATGGCTGGG ATTTTGCGCT TAGTAGTTCA ATGGCCCCCA GGCAGACTAC AGACCGTGAC AAAAGGTGTG
MRPL30P1 A AAGAGAGCAA TCACTACACT TACGGCTGAG ACTTTGCGCT TAGTAGTTCA GAGGCCCCCA GGCAGACTAC AGACCGTGAC AAAAGGTGTA
MRPL30P2 CTCTA AAGAGAACAG CCACCACACT TATGGCAGGG ACTTTGCTGT CAGTAGCTCA AGAGGCAAAA TGAA--CTAC AGACTGGGAC AAAAGGTGTG
MRPL30P3 CTCTCTCTA AAGAGAACAG CCACCACACT TATGGCAGGG ACTTTGCTGT CAGTAGCTCA AGAGGCAAAA TGAA--CTAC AGACTGGGAC AAAAGGTGTG
Consensus .......... .......... .......... .....ctctA AAGAGAgCAa tCACtACACT TAtGGCtGgG AcTTTGCgcT tAGTAGtTCA a.gGcCcccA gGcAgaCTAC AGACcGtGAC AAAAGGTGTg
131 260
MRPL30 GAGTCTCTTA TTTGTACAGA TTGGATTCGT CACAA-TTCA CCAGATCAAG AATTCCAGAA AAAGTGTTTC AGGCCTCACC TGAAGATCAT GAAAAATACG GTGGGGATCC ACAGAACCCT CATAAACTGC
MRPL30P1 GAGTCTC--A TTTGTACAGA TTGGATTCGT CACAAATTCA CCAGATCAAA AATTCCAGAT AAAGTGTTTC ACGCCTCACC TGAAGATCAT GAAAAATATG GTGGGGATCC ACAGAACCCT CATAAACTGC
MRPL30P2 AAGTCTCTCG TTTACATAGA TTGGATTCAT CACAAATTTA CCAGGTCAAG AATTCCATAT AAAGCGTTTC AGCCTTCACT TGCAGATCAT GAAAAATATG ACGGAGATCC ACAGAATCCT CAGAAACTGC
MRPL30P3 AAGTCTCTCG TTTACATAGA TTGGATTCAT CACAAATTTA CCAGGTCAAG AATTCCATAT AAAGCGTTTC AGCCTTCACT TGCAGATCAT GAAAAATATG ACGGAGATCC ACAGAATCCT CAGAAACTGC
Consensus gAGTCTCt.a TTTgtAcAGA TTGGATTCgT CACAAaTTcA CCAGaTCAAg AATTCCAgAt AAAGtGTTTC AggCcTCACc TGaAGATCAT GAAAAATAtG gtGGgGATCC ACAGAAcCCT CAtAAACTGC
261 390
MRPL30 ATATTGTTAC CAGAATAAAA A-GTACAAGA AGACGTCCAT ATTGGGAAAA AGATATAATA AAGATGCTTG GATTAGAAAA AGCACATACC CCTCAAGTTC ACAAGAATAT CCCTTCAGTG AATGCAAAAT
MRPL30P1 ATATTGTTAC CAGAATAAAA A-GTACAA-A ATACGTCCAT ATTGGGAAAA AGATATAATA AAGAAGCTTG GATTGGAAAA ATCACATATC CCTCAAGTTC ACCAGAAT-T CCCTTCAGTG AATGCAAAAT
MRPL30P2 ATATTGTTAC CAGAATAAAA AAGTACAAAA AGGTGTCCAT ATTGGGAAAA AGACATAATA AAGATGCTCA GATTAGAAAA CACACATATC CATCAAGTTC ACAAGCATAT TGCTTCAGTG AATGCAAAAC
MRPL30P3 ATATTGTTAC CAGAATAAAA AAGTACAAAA AGGTGTCCAT ATTGGGAAAA AGACATAATA AAGATGCTCA GATTAGAAAA CACACATATC CATCAAGTTC ACAAGCATAT TGCTTCAGTG AATGCAAAAC
Consensus ATATTGTTAC CAGAATAAAA A.GTACAA.A AgacGTCCAT ATTGGGAAAA AGAtATAATA AAGAtGCTtg GATTaGAAAA a.CACATAtC CcTCAAGTTC ACaAGaATaT ccCTTCAGTG AATGCAAAAt
391 458
MRPL30 TGAAAGTAGT TAAGCATTTG ATAAGGTTTG TTGTTTCTTC TCAGCTCTTT TTAAAATGTA TTGCCTAG
MRPL30P1 TGAAAGTGGT TAAGCATTTG ATAAG
MRPL30P2 TGAAAGTGGT TTAACAGTCA GTAAG
MRPL30P3 TGAAAGTGGT TTAACAGTCA GTAAG
Consensus TGAAAGTgGT TaAgCAtTtg aTAAG..... .......... .......... .......... ........