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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 438 Check: 0 ..
Name: MRPL42 Len: 438 Check: 8426 Weight: 0.71
Name: MRPL42P2 Len: 438 Check: 7233 Weight: 0.71
Name: MRPL42P1 Len: 438 Check: 4015 Weight: 0.83
Name: MRPL42P5 Len: 438 Check: 7606 Weight: 0.87
Name: MRPL42P3 Len: 438 Check: 8559 Weight: 1.37
Name: MRPL42P4 Len: 438 Check: 1996 Weight: 1.50
Name: Consensus Len: 438 Check: 2755 Weight: 0.00
//
1 130
MRPL42 ATGGCTGTAG CTGCAGTAAA ATGGGTGATG TCAAAGAGAA CTATCTTGAA ACATT----T ATTTCCAGTC CAAAATGGAG CTTTATATTG TGTTTGTCAT AAATCTACGT ATTCTCCTCT ACCAGATGAC
MRPL42P2 ATGGCTGTAG CAGCAGTAAA ATAGAGGACA GTAAAGCAAA TTGTCTTGAA ACATT----T ATTTCCAATG CAAAATGGAG CTTTATACTG TGTGTGTTAT AAATCTATGT ATTCTTCTCT ACCTGATGAC
MRPL42P1 ATGGCTGTAG CAGCAGCAAA ATGGGTGCTA TCAAAAAGAA CTATCTTGAA TAGTTCCAAT ATTACCAATC CAAAACAGAG TTTTATATTG T--TTGTCAT AAATCTCCAT ATTCTTCTCT ACCAGATGAC
MRPL42P5 ATGGCAGTAG CAGCAGTAAG ACGGGTGATA TCAAAGAGAA CTATCTGGAA ACATT----T ATCTTCAATC CAAAATGGAG CCTTATGTT- ----TGTCAT AAATCTACGT ACTCTTCTTT TCCAGGTGAC
MRPL42P3 G TATTTGA-AT AATTCCGTGT ATTCTTCTCT TTCAGATGAC
MRPL42P4 ATGGAG CTCTGTATTG T--TTTTTAT AAATCTATGT ATTCTTCACT GTTAG--GCC
Consensus atggc.gtag c.gcag.aa. a..g..g... ..aaa...aa .t.tct.gaa ...tt....t at...ca.t. caaaatggag ctttatattg t..tTgt.AT AAaTCtatgT AtTCTtCtcT .ccaGatGaC
131 260
MRPL42 TATAATTGCA ACGTAGAGCT TGCTCTGACT TCTGATGGCA GGACAATAGT ATGCTACCAC CCTTCTGTGG ACATTCCATA TGAACACACA AAACCTATCC CTC-GGCCAG ATCCTGTGCA TAATAATGAA
MRPL42P2 TATAATTGCA AAACAGAGCT TGCTGTGACT TCCAATGGCA GGAAGTGAGC CTGCTACCAC TCTCCTGTGG ACATTCCCTA TGAATACACA AAACCCATCC TTC-AACCAC ATCCTGGGCA CAATAATGAA
MRPL42P1 TGTAATTGCA AAGAAGAGCT TGCTGTGATA TCTGATGGCA GAACAATAGT GTGCTACCAC CATTCTGTGG ACATTTCATA TGAGCATACA AAACAAA-CC CTC-AATCAG ATTCTGTGCA TGATAATGAA
MRPL42P5 TACAATTGCA AAGTAGAATT TGCTTTGACA CCTGATGCCA GGACAATAGT ATGTTACCAT CCTTCTATAG ACATTCCATA TGAACGCACA AAACCTATCC CTT-GACCAG ATCCTGTGTA TAATAATGAA
MRPL42P3 TGTAAATGCA AAGTACAGCT TGCTTTGATA TCTGACGGCA GGATGACATT ATGCTACCAC CGTTCTGTGG ACATTCCATA TGAACACACC AAACCTATCC CTCTAAACAG ATCCTGTGCA TAATAACTAA
MRPL42P4 A-------CA AAGTAGAGCT TTTCTTGACA TCTGATGGCA GCACAATAGT AAGCTGCACC GCTTCTGTGG ACATTGCAGA TGAACACATA AAACCTCTCC CTC-AACCAG ATCCTGTACG TGACAATGAA
Consensus t.taattgCA AagtAgAgcT TgcttTGAca tCtgAtGgCA GgAcaatAgt atGcTaCcac ccTtCTgTgG ACATTcCatA TGAacacAca AAACctatCC cTc.aacCAg ATcCTGtgca taAtAAtgAA
261 390
MRPL42 GAAACACATG ATCAAGTGCT GAAAACCAGA TTGG-AAGAA AAAGTTGAAC ACCTTGAGGA AGGACCTATG ATAGAACAAC TTAGCAAAAT GTTCTTTACT ACTAAGCACC GTTGGTATCC T---CATGGA
MRPL42P2 GAAATACAAG ATCAAGTGCT GAAAACCAGA TTGG-AAGAA AAAGGTGAAC ACCTTGAGCA AAGACCCATG ATAGAACAAC TTAGCAAAAT GTTCTTTAGT ATTACACGCT GTTGGTATTC T---CATGGA
MRPL42P1 GAAACATATG TTCAAGTGCT GAAAACTAGA TTGG-AAGAT AAAGGTAAGC ATCTTGAGAA A---CCCATG ATAGAACAAC TCGGCAAAAT GTTCTTTCCT ACTAAACACC ACTGGTATCC T---CATGGA
MRPL42P5 GAAACACATG GTCAAGTGCT GAAAACTAGA ---G-AAGAA AAAAGTGAAC ACCTTGAGCG AGAACCCATA ATAGAACAAC TTAGCAAAAT GTTCTTTA-T GCTAAGTACG GTTGGCATCT T---CGTGGA
MRPL42P3 GAAACACATG ACCAGGTGCT CAGAGCCAGA TTAG-AAGAA TA---TGAGC ACCTTGAGCA AGGACCCA-G ATAGACCAGC TTAGCAAAAT GTTTGTTACC ACTAAGCACT GTTGATATCC T---CATGGA
MRPL42P4 GAAACACATG CTCAAGTGCT GAAAAATAGA TTAGCAAAAA AAAGGTCAGT ACCTTAAGCA AGGACC-ACG ATAGAACAAC TTAGCAAAAT GTTCTTCATC ACTCAGTACT GGTATCGTTG TGGGCAGTAT
Consensus GAAAcAcAtG .tCAaGTGCT gAaAactAGA tt.G.AAgAa aAaggTgAgc AcCTTgAGca AggaCCcAtg ATAGAaCAaC TtaGCAAAAT GTTctTta.t acTaagcaCt gtTggtaTcc T...Catgga
391 438
MRPL42 CGGTATCACA GATGTCGTAA GAATCTGAAT CCTCCAAAAG ACAGATGA
MRPL42P2 CAGTATTAAA GATGTTGCAA GAAACTAGAT CTTCTAAAAG GCAGATGA
MRPL42P1 CAGTATCAC- GATGTCTTAA GAAACTAGAC CCTCCAAACG ACAGATTT
MRPL42P5 CATTAGCACA GATGTCAGAA GAAACCGGAA CCTCCAGAAG ACAGATGA
MRPL42P3 CAGTATCACA G-TGTCATAA AAAACTGAAC CCTCCAAAAG ACAGATGA
MRPL42P4 CAGTCTCACA GTCATGGTAA GAATGTAGAT GGTCTGAAAG ACAAACAA
Consensus CagTatcAca GatgTc.tAA gAAactagA. ccTCcaaAaG aCAgAtga