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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 951 Check: 0 ..
Name: MRPL45_CDS Len: 951 Check: 845 Weight: 0.75
Name: MRPL45P1 Len: 951 Check: 4802 Weight: 0.75
Name: MRPL45P2 Len: 951 Check: 9816 Weight: 1.49
Name: Consensus Len: 951 Check: 311 Weight: 0.00
//
1 130
MRPL45_CDS ATGGCAGCCC TCATACCTCA AGGGTTCTCT TGTTTATCGA GGGTTTTGGG CTGGTGGTCT CGGCA---GC CAGTTCTGGT GACTCAGTCC GCAGCTATAG TTCCAGTAAG AACTAAAAAA CGTTTCACAT
MRPL45P1 ATGGCAGCCC CCATATCTCA GGGGTTGTCT CTTTTATCAA GGGTTTTGGG CTGGTGATCT CCGCA---GC CAGTTCTGGT GAGTCAGTCT GCAGCTATAG TTCCAGTAAG AACTAAAAAA CGTTTCACAC
MRPL45P2 ATGGCAGCCC TCATACCTCA AGGGTTCTCT TGTTTATCGA GGGTTTTGGG CTGGTGGTCT CGGCACCAGC CAGTTCTGGT GACTCAGTCC GCAGCTATAG TTCCAGTAAG AACTAAAAAA CGTTTCACAT
Consensus ATGGCAGCCC tCATAcCTCA aGGGTTcTCT tgTTTATCgA GGGTTTTGGG CTGGTGgTCT CgGCA...GC CAGTTCTGGT GAcTCAGTCc GCAGCTATAG TTCCAGTAAG AACTAAAAAA CGTTTCACAt
131 260
MRPL45_CDS CTCCTATTTA TCAACCTAAA TTTAAAACAG AAAAGGAGTT TATGCAACAT GCCCGGAAAG CAGGATTGGT TATTCCTCCA GAAAAATCGG ACCGTTCCAT ACATCTGGCC TGTACAG--- ------CTGG
MRPL45P1 CTCCTATTTA TCAACCTAAA TACAAAACAG AAAAGGAGTT TATGAAACAC GCCTGGAAAG CAGGACTGGT TATTCCTCCA GAACGTCTGG ATCATCCCAT ACATCTGTCC TGTACAG--- ------CTGG
MRPL45P2 CTCCTATTTA TCAACCTAAA TTTAAAACAG AAAAGGAGTT TATGCAACAT GCCCGGAAAG CAGGATTGGT TATTCCTCCA GAAAAATCGG ACCGTTCCAT ACATCTGGCC TGTACAGGTG ATACAGCTGG
Consensus CTCCTATTTA TCAACCTAAA TttAAAACAG AAAAGGAGTT TATGcAACAt GCCcGGAAAG CAGGAtTGGT TATTCCTCCA GAAaaatcGG AcCgTtCCAT ACATCTGgCC TGTACAG... ......CTGG
261 390
MRPL45_CDS TATATTTGAT GCCTATGTTC CTCCTGAGGG TGATGCACGC ATATCATCTC TTTCAAAGGA GGGA------ ------CTGA TAGAGAGAAC TGAACGAATG AAGAAGACTA TGGCATCACA AGTGTC----
MRPL45P1 TATCTTTGAT GCCTATGTTC CTCCTGAGGG TGATGCTCAC ATGCCATCTC TTTCAAAGGA AGGA------ ------CTGA AACAGAGAAC TGAACAAATG AAGAAGAATG TGGCATCACA ATTTTC----
MRPL45P2 TATATTTGAT GCCTATGTTC CTCCTGAGGG TGATGCACGC ATATCATCTC TTTCAAAGGA GAGATGATAG AGAGAACTGA TAGAGAGAAC TGAACGAATG AAGAAGACTA TGGCATCACA AGTGTCTTAC
Consensus TATaTTTGAT GCCTATGTTC CTCCTGAGGG TGATGCaCgC ATatCATCTC TTTCAAAGGA ggGA...... ......CTGA tAgAGAGAAC TGAACgAATG AAGAAGAcTa TGGCATCACA AgTgTC....
391 520
MRPL45_CDS --AATCCGGA GGATAAAAGA CTATGATGCC AACTTTAAAA TAAAGGACTT CCCTGAAAAA GCTAAGGATA TCTTTATTGA AGCTCACCTT TGTCTAAATA ACTCAGACCA TGACCGACTT CATACCTTGG
MRPL45P1 --AATCCAGA AGATAAAAGA GGATGACGAC AATTTTGAAA CAAAGGACTT TCCTGAAAAA GCTAAGGATA TATTTACTGA AGTTCACCTT TGTCTAAACA ACTCACAC-A TGACTGACTG CATACCTTGG
MRPL45P2 AGAATCCGGA GGATAAAAGA CTATGATGCC AACTTTAAAA TAAAGGACTT CCCTGAAAAA GCTAAGGATA TCTTTATTGA AGCTCACCTT TGTCTAAA
Consensus ..AATCCgGA gGATAAAAGA ctATGAtGcC AAcTTTaAAA tAAAGGACTT cCCTGAAAAA GCTAAGGATA TcTTTAtTGA AGcTCACCTT TGTCTAAA.a actca.ac.a tgac.gact. cataccttgg
521 650
MRPL45_CDS TAACTGAACA CTGTTTTCCA GACATGACTT GGGACATCAA ATATAAGACC GTCCGCTGGA GCTTTGTGGA ATCTTTAGAG CCCTCTCATG TTGTTCAAGT TCGCTGTTCA AGTATGATGA ACCAGGGCAA
MRPL45P1 TAACTGAGCA CTGTTTTCCA GACATGATCT GAGACATCAA ATATAAGACC ATCCGCTGGA GCTTCCTGGA ATCTTTAGAG CCCCACCATG TGGTTCAAGT TCGCTGTTCA AGTCTGATGA ACCAGGGCAA
MRPL45P2
Consensus taactga.ca ctgttttcca gacatga..t g.gacatcaa atataagacc .tccgctgga gctt..tgga atctttagag ccc...catg t.gttcaagt tcgctgttca agt.tgatga accagggcaa
651 780
MRPL45_CDS CGTGTACGGC CAGATCACCG TACGCATGCA CACCCGGCAG ACTCTGGCCA TCTATGACCG GTTTGGCCGG TTGATGTATG GACAGGAAGA TGTACCCAAG GATGTCCTGG AGTATGTTGT ATTCGAAAAG
MRPL45P1 CATATACGGC TAG-TCACCG TAGGCATGCA CACCCAGCAG ACTCTGGCCA TCTGTGACTG GTTTGGCCGG TTGATGTATG GACAGGAAGA TGTACCCAAG AATGTCCTGG AGTATGTTGT ATTTGAAAAG
MRPL45P2
Consensus c.t.tacggc .ag.tcaccg ta.gcatgca caccc.gcag actctggcca tct.tgac.g gtttggccgg ttgatgtatg gacaggaaga tgtacccaag .atgtcctgg agtatgttgt att.gaaaag
781 910
MRPL45_CDS CAGTTGACAA ACCCCTATGG AAGCTGGAGA ATGCATACCA AGATCGTTCC CCCATGGGCA CCCCCTAAGC AGCCCATCCT TAAGACGGTG ATGATCCCTG GCCCTCAGCT GAAACCAGAA GAAGAATATG
MRPL45P1 CACCTGACAA ACCCCTATGG AAGCTGGAGA ATGCATGGCA AGATCGTTCC CCCATGGGCA CCCGCTAAGC A--CCATCCT TAAGATGGTT ATGATCCCTG GCCCTCAGCT GAAACCAGGG GAAGAATATG
MRPL45P2
Consensus ca..tgacaa acccctatgg aagctggaga atgcat..ca agatcgttcc cccatgggca ccc.ctaagc a..ccatcct taaga.ggt. atgatccctg gccctcagct gaaaccag.. gaagaatatg
911 951
MRPL45_CDS AAGAGGCACA AGGAGAGGCC CAGAAGCCTC AGCTAGCCTG A
MRPL45P1 AAGAGGCACA AGGAGAGGCC CAGAAGCCTC AGCTAGCCTG A
MRPL45P2
Consensus aagaggcaca aggagaggcc cagaagcctc agctagcctg a