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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 540 Check: 0 ..
Name: MRPL49 Len: 540 Check: 4249 Weight: 0.75
Name: MRPL49P1 Len: 540 Check: 9874 Weight: 0.75
Name: MRPL49P2 Len: 540 Check: 2314 Weight: 1.49
Name: Consensus Len: 540 Check: 3096 Weight: 0.00
//
1 130
MRPL49 ATGGCAGCT ACCATGTTCC GGGCTACGCT GCGGGGATGG AGAACCGGTG TCCAGCGGGG CTGCGGGCTA CGGCTGTTGA GCCAGACCCA GGGCCCTCCA GATTACCCCA GGTTTGTGGA GTCTGTGGAT
MRPL49P1 AGGGGCAACT ACCATGTTCC GGGACATGCT GCAGGGCTGG AGAACCAACA TCCACCAGGG CTGTGGGCTA TGACTACTGA GCCAGACCCT GGCAGCTCTG GATTATCCGA GCTTTGTGAA GCCTGTGGAT
MRPL49P2 AGGGCAACA TCCACGTTCT GGGCTGCACT GCTGGACTGG AGAGCCAGTA TCCAGTCTGG CTATTCACCA T-ATAGCTGA GATAGGTTCA GGGGTCTCCA GATTACCCCA GGTTTGTAGA GTATATGTAT
Consensus .agGGCAaCt aCCAtGTTCc GGGctacgCT GC.GGgcTGG AGAaCCagta TCCAgc.gGG CTgtgggCtA tgactgcTGA GccAGaccCa GGg..CTCca GATTAcCCcA GgTTTGTggA GtcTgTGgAT
131 260
MRPL49 GAATATCAGT TTGTGGAGCG CCTGTTACCG GCTACCAGGA TCCCAGATCC CCCAAAGCAT GAACATTATC CTACCCCTAG TGGCTGGCAG CCTCCCAGAG A--CCCCC-- ---CACCCAA CCTGCCTTAC
MRPL49P1 GAACA--CGT TTGCAGAGTG ACTGTTACTC TTCACTAGGA TCCCAAAGTC CCCAAGGCAT GAACATTATC CCACCCCAA- TGGCTGGCAA CCTCCCAGAG AAACCCCCAA CCCCACCCAA TCTGCCCTAC
MRPL49P2 GAATACCAAT TTGTGGAGTG TCTATTATTC CCTACCAGCG TCTTAATGCC CCCAAAGCAT GAACATTATC TCAGTCTTAG TAACTGGCAG CCTCTCAAAG A--CCCCC-- ----ATCCAA CCTGCCCTAC
Consensus GAAtA.cagT TTGtgGAGtG .CTgTTActc .ctACcAGga TCccAaagcC CCCAAaGCAT GAACATTATC ccAccCctAg TggCTGGCAg CCTCcCAgAG A..CCCCC.. ...cAcCCAA cCTGCCcTAC
261 390
MRPL49 TTTGTACGAC GCTCTCGGAT GCACAACATC CCCGTCTACA AGGACATCAC GCATGGCAAC CGGCAGATGA CTGTGATCCG GAAAGTGGAA GGGGACATCT GGGCCCTGCA GAAAGACGTG GAAGATTTTC
MRPL49P1 TTGGTGCAGT GCCCTCAGAT GCACAAAATC CTTGTCTATA AGGACATCAC ACATGGCAAC TTTCAGATGA CTGTGACCCC AAAGGTGGAG GGGGACATCT GGGCGCTGCT GAAGGATGTG GAGGATTTTC
MRPL49P2 TTAGTGCAGC ACTCTCAGAT ATACAACATC CCTGTCTA-- ---------- ------CAAC C--------- ----GGTCGG GAGCGCGGAG GACCATATTT GGGCCCCGCA GAAGAATGTG GAAGATTTTC
Consensus TT.GTgCagc gCtCTCaGAT gcACAAcATC CctGTCTA.a aggacatcac .catggCAAC c..cagatga ctgtGatCcg gAa.GtGGAg GgggAcATcT GGGCcCtGCa GAAggAtGTG GAaGATTTTC
391 520
MRPL49 TGAGCCCGCT GCTGGGGAAG ACACCTGT-- ---------- ---------- --CACCCAGG TCAATGAGGT GACAGGTACC CTACGGATCA AGGGCTACTT TGACCAGGAG CTT------- AAAGCCTGGC
MRPL49P1 TGAGCCCACT GCTGGGAAAG ACACCTGTTC CTGTGTACCC GTACCCGTAC CTCAGCCAGG TCAATGAGGT GACAGGTATG CTGCAGGTCA GGGGAGACTT TTTTTTTTTT TTTGTGAGAC AGAGTCTCGC
MRPL49P2 TGAGTCCACT GCTGGCAAAG ACATGCATT- ---------- ---------- ---ACCCAGG CCAAAGAGTT GACAGGTACC CTGCAGGTCA AGGGCTACTT TGACCAGCAG CG-------C AAAGCCTGGC
Consensus TGAGcCCaCT GCTGGgaAAG ACAcctgTt. .......... .......... ..cAcCCAGG tCAAtGAGgT GACAGGTAcc CTgCaGgTCA aGGGctACTT Tgaccag.ag ctt......c AaAGcCTgGC
521 540
MRPL49 TCTTGGAGAA AGGCTTCTGA
MRPL49P1 TCTGTTGCCC ACGCTGGAGT
MRPL49P2 TCCTGAAGAA GGGCTACTGA
Consensus TCttg.agaa agGCT.ctGa