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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 485 Check: 0 ..
Name: MRPL50 Len: 485 Check: 2526 Weight: 0.63
Name: MRPL50P2 Len: 485 Check: 6788 Weight: 0.63
Name: MRPL50P3 Len: 485 Check: 377 Weight: 0.63
Name: MRPL50P4 Len: 485 Check: 6984 Weight: 0.63
Name: MRPL50P1 Len: 485 Check: 7373 Weight: 2.46
Name: Consensus Len: 485 Check: 6802 Weight: 0.00
//
1 130
MRPL50 ATGGCGGCGC GATCTGTGTC GGGCATTACC AGAAGAGTCT TCATGTGGAC AGTCTCAGGG ACACCATGTA GAGAATTTTG GTCTCGATTC AGAAAAGAGA AAGAGCCAGT GGTTGTTGAG ACAGTA---G
MRPL50P2 ATGGCAGCGC AATCTGTGTC CGGCATTACC AGAAAAGTCT TCATGTGGAC AGTCTCAGGG GCACCACATA CAGAATTTTG GTCTCGATCC AGAAAATAGA AAGAGCCAGT GGTTGCTGAG ACAGTACAAG
MRPL50P3 ATGGCGGGGC GATCTGTGTC TGGCATTACC AGAAGAGTCT TCATGTGGAC AGTCTCAGGG ACAACACGTA GAGAATTTGG GTCTCGATCC AGAAAAGAGA AAGTGCCAGT GGTTGCTGAG ACAGAA---G
MRPL50P4 ATGGTGGTGC AATCTGTGTC CAGCATTATC AGAAGAGTCT TTATGTGGAC AGTCTCAGGG GCACC-TGAA GAGAATTTTG GTCTCAATCC AGAAAAGAGA AAGAGCCAGT GGTTGCTGAG ACAGTAAAAG
MRPL50P1 CAAAATAAT AGCAATTTTG GTCTCGATCG AGGAAAGATA AAGAGCCAGT GGTAGCTGAG GTGGCAGAAG
Consensus atgg..g.gc .atctgtgtc ..gcatta.c agaa.agtct t.atgtggac agtctcaggg .CAacataaa .agAATTTtG GTCTCgATcc AGaAAAgAgA AAGaGCCAGT GGTtGcTGAG acaG.A.aaG
131 260
MRPL50 AAGAGAAAAA GGAACCTATC CT-AGTGTGT CCACCTTTAC GAAGCCGAGC ATACACACCA CCTGAAGATC TCCAGAG--T CGTTTGGAAT CTT-ACGTTA AAGAAGTTTT TGGTTCATCT CTTCCTAGTA
MRPL50P2 AGGTGAAAAA GGAATCTATC CTCAGTGTGT CTACCCTCAC AAAGCCGAGC ATACACACAA CCTGAAGATC TCCAGAG--T TGTTTGGAAT CTT-ATGTTA AAGAAGTTTT TGGTTCATCT CTTTCTAGTA
MRPL50P3 AGGTGAAAAA GGAACCTATT -GCAGTGTGT CCACCCTCAT GAAGCTGAGG ATACTCACCA CCTGGAGATC TCCAGAG--T CATTTGGAAT CTT-ATGTTA AAGAAGCTTT TGGTTCATCT CTTCCTGGTA
MRPL50P4 AGGTGAAAAA AGAACCTATC C-CAGTGCGT CCACCCTTAC GAAGCCAAAC ATATACACCA CCTGAAGGTC TCCAGAG--T CGTTTGGAAT CTTTATGTTA AATAAGTTTT TGGCTCATGT TTTCCTAGTA
MRPL50P1 AGGTGAAAAA GGAATA-CTC TGGCATGC-C CTACCCTTAC AAAGCCAAAC ATACTTATCA CCTGAAGATC TCCAGAGAGT CGTTTTGAAC CT----GGTA AAGAGG-TTT TGGTTCATTT CTTCCCGGTA
Consensus AgGtGAAAAA gGAAtctaTc .g.agTGcgt CtACCcTtAc aAAGCcaAac ATActcAccA CCTGaAGaTC TCCAGAG..T cgTTTgGAAt CTt.a.GtTA AAgAaG.TTT TGGtTCAT.T cTTcCtgGTA
261 390
MRPL50 ATTGGCAAGA CATCTCCCTG GAAGATAGTC GTCTAAAGTT CAATCTTCTG GCTCATTTAG CTGATGACTT GGGTCATGTA GTCCCTAACT CCAGACTCCA CCAGATGTGC AGGGTTAGAG ATGTTCTTGA
MRPL50P2 ATTGGCAAGA CATCTCCCTG GAAGATGGTC ATCTACGGTT CAATCTCTTG GCACATTTAG CTGATGGCTT GGGTCATGTA GTCCCTAACT CCAGACTCCA CCAGATATGC AGGGTTAGAG ATGTTCTTGA
MRPL50P3 ATTGGCACGA CATCTCCCAG GAAGATGGTC ATCTAAAGTT CAATCTCTTG GCACATTTAG CTGATGGCCT GGGTCACGTA GTCTCTAACT CCAGACTCCA CCAGATGTGC GGGGTTAGAG ATGTTCTTGA
MRPL50P4 ATTGGCAAGA CATTTCCCTG GAAGATGGTT GTCTACAGTT CAATCTTTTG GCACATTTAG CTTATGACTT GGGTCATGTA GTCCCTAATT CCAGACTCCA CCAGTTGTGC AGGATTAGAG ATGTTCTTGG
MRPL50P1 ATTGAGAGGA CAGATCCCTG GAAGATGGTA ATCTGAAGTT CAGTCTC--- ---------- -----GGCAT GGCCATTGTA GTCCCTAACT CCAGGCTTCA CGAGCTGTGC AGCGTTAGAG ATGTTCTTGA
Consensus ATTGgcA.GA CAt.TCCCtG GAAGATgGT. aTCTaaaGTT CAaTCTc.tg gc.catttag ct.atGgC.T GGgtcatGTA GTCcCTAAcT CCAGaCTcCA CcAG.TgTGC aGggTTAGAG ATGTTCTTGa
391 485
MRPL50 TTT-CTATAA TGTCCCTATT CAAGATAGAT CTAAATTTGA TGAACTCAGT GCCAGTAATC TGCCCCCCAA TTTGAAAATC ACTTGGAGTT ACTAA
MRPL50P2 TTTTCTATAA TGTCCCTATT CAAGATAGAT CTAAATTTGA TGAACTCAGT GCCAGTAATC TGCCCCCCAA TTTGAAAATC ACTTGGAGTT ACTAA
MRPL50P3 TTT-CTATAA TGTCCCTATT CAAGACAGAC CTAAATTTGA TGAACTCGGT GCCAGTAATC TGCCCCCTAG TTTGAAAATC ACTTGGAGCA ATTCG
MRPL50P4 TTT-CTATAA TGTCCCTATT CAAGATAGAT CTAAATTTTA TGAACTCAAT GCCAGTAATC TGCCCCCCAA TTTGAAAATC ACTTGGAGTT ACTAA
MRPL50P1 TTT-CTATAA AGTCGCTGTT CACAACAGAT GTAAATTTGA TGAACTTGAT GCCAATAATC TGCCTCTCAA TTTGAAAACC ACCTGAAGTT ACTGA
Consensus TTT.CTATAA tGTCcCTaTT CAagAcAGAt cTAAATTTgA TGAACTcgaT GCCAgTAATC TGCCcCccAa TTTGAAAAtC ACtTGgAGtt AcT.a