Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 435 Check: 0 ..
Name: MRPS18C Len: 435 Check: 6860 Weight: 0.51
Name: MRPS18CP5 Len: 435 Check: 7384 Weight: 0.51
Name: MRPS18CP2 Len: 435 Check: 5042 Weight: 0.91
Name: MRPS18CP6 Len: 435 Check: 8484 Weight: 1.07
Name: MRPS18CP3 Len: 435 Check: 4839 Weight: 1.20
Name: MRPS18CP4 Len: 435 Check: 5691 Weight: 1.38
Name: MRPS18CP1 Len: 435 Check: 1104 Weight: 1.42
Name: Consensus Len: 435 Check: 3011 Weight: 0.00
//
1 130
MRPS18C ATGGCCGCTG TGGTTGCTGT TTGCGGTGGT CTAGGGAGGA AGAAGTTGAC ACACTTGGTA ACGGCTGCTG TCAGCCTTAC ACATCCCGGG ACTCACACGG TGCTTTGGAG AAGAGGTTGT TCACAA----
MRPS18CP5 ATGGCCACTA TAGTTGCTCT TTGCAGTGGT CTGGGGAGGA AGAAGTTGAC ACACCTTGTA ATGGCTGCTG TTAGCCTTAC ACATCCCAGG ACTCATATGG TGCTATGGAG AAGAGGTTGT TCACAATATA
MRPS18CP2 ACGGCCGCTA TGGTTGCTGT TTGCGGTGGT CTAGGGAGGA AGAAGTTGAC ACACCTGGTA ACGGCTGCTG TCAGCCTTAC ACATTCCGGG ACTCACACGG TGCTTTGGAG AAGAGGTTGT TCACAATATA
MRPS18CP6
MRPS18CP3
MRPS18CP4
MRPS18CP1 ATGGCCGCTG TGGTTGCTGT TTGCGGTGGT CTAGGGAGGA AGAAGTTGAC ACACTTGGTA ACGGCTGCTG TCAGCCTTAC ACATCCCGGG ACTCACACGG -GTAAAGTCT
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
131 260
MRPS18C --CAGGTATC CAGCAATGAG GACCTGCCCA TTTCAATGGA AAATCCTTAT AAAGAACCTC TTAAGAAATG TATCTTGTGT GGAAAGCATG TAGATTATAA GAATGTACAG CTTTTGTCCC AGTTTGTTTC
MRPS18CP5 AACAGATATC CAGCAATGAG GACCTGCCCA TTCCAATGGA AAATTCTTAT AAAGAAGCCC TTAAGAAATG TATCTTGTGT GGAAAGCAGG TAGATTTTAA GAATGTACAG C----GTCCC AGTTTATTTC
MRPS18CP2 AACAGGTATC CAGCAACGAG GACCTG---- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
MRPS18CP6 AA AAAAGAATTG TATCTTGTGT GGAAAGCGTG TAGATGATAA GAATGTACAG CTCTTGTCCC ACTTTATTTC
MRPS18CP3 TATTTTACAG GTCTTTGTGG GAAGAAACAA ATCACAAAAG CAATTAAGAG AGCTCAAACA
MRPS18CP4
MRPS18CP1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
261 390
MRPS18C TCCATTTACT GGATGCATTT ATGGAAGGCA CATTACAGGT CTTTGTGGGA AGAAACAGAA AGAAATCACA AAAGCAATTA AGAGAGCTCA AATAATGGGG TTTATGCCAG TTACATACAA GGATCCTGCA
MRPS18CP5 TCCATTTGTT GGATGCATTT GTGGAAGGCA CAAAACAGGT CTTTGTGGGA AGAAACAGAA AGAAATCACA AAAGCAATTA AGAGAGCTCA AATAATGGGG TTTCTGCCAG TTACATCCAA GGATGCTGCA
MRPS18CP2 ---------- ---------- ---------- --------GT CTTTGTGGGA AGAAACAGAA AGAAATCACG AAAGCAATTA AGAGAGCTCA AATAATGGGG TTTATGTCAG TTACATACAA GGATCCTGCA
MRPS18CP6 TCCATTTACT GGAGGCATTT ATGGAAGGTA CATTATAGGT CTTTGTGGGA AGAAACAGAA AGAAATCACA GAAGCAATTA AGAGAGCTCA AATAATGGGA TTTATGCCAG TTACATACAA GGAT-CTGCA
MRPS18CP3 ATGGGTAAGA AAGAGCACCT ----CAACAA CTGTATTGAG CTAGCTGAAA TTTTGCTCAT TATGCTTTGT CAAGAACTTT AATTATCTCT --TTACAGGG TTTATGCCAG TTACATACAA GGATCCTGCA
MRPS18CP4 TAGTTCATC ATACATACAA GGATACTGCA
MRPS18CP1
Consensus .......... .......... .......... .......... ct...tg..a .....c..a. .....t.... .aag.a.tt. a...a.ctc. ..t.a..gg. tttatgccag ttacatacaa ggat.ctgca
391 435
MRPS18C TATCTCAAGG ACCCTAAAGT TTGTAACATC AGATATCGGG AATAA
MRPS18CP5 TATCTCAAGG ACCCTAAAGT TTGTAACATC AGATATCAGG AGTAA
MRPS18CP2 TATCTCAAGG ACCCTAAAGG TTGTAACATC AGATATCGGG AATAA
MRPS18CP6 TATCTCAAGG ACCCTAAAGT TTGTAATATC AGATGTTGGG AAATT
MRPS18CP3 TATTTCAGGG ACCCTAAAGT TTATAACATC AGATATCCGG AATAA
MRPS18CP4 TACCTCAAAG ACCCCAAAGT TTGTAACATC AATTATCAGG AATAA
MRPS18CP1
Consensus tatctcaagg accctaaagt ttgtaacatc agatatc.gg aataa