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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1197 Check: 0 ..
Name: MRPS29 Len: 1197 Check: 516 Weight: 0.75
Name: MRPS29P2 Len: 1197 Check: 3988 Weight: 0.75
Name: MRPS29P1 Len: 1197 Check: 8871 Weight: 1.49
Name: Consensus Len: 1197 Check: 2753 Weight: 0.00
//
1 130
MRPS29 ATGATGCTGA AAGGAATAAC AAGGCTTATC TCTAGGATCC ATAAGTTGGA CCCTGGGCGT TTTTTACACA TGGGGACCCA GGCTCGCCAA AGCATTGCTG CTCACCTAGA TAACCAGGTT CCAGTTGAGA
MRPS29P2
MRPS29P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
131 260
MRPS29 GTCCGAGAGC TATTTCCCGC ACCAATGAGA ATGACCCGGC CAAGCATGGG GATCAGCACG AGGGTCAGCA CTACAACATC TCCCCCCAGG ATTTGGAGAC TGTATTTCCC CATGGCCTTC CTCCTCGCTT
MRPS29P2
MRPS29P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
261 390
MRPS29 TGTGATGCAG GTGAAGACAT TCAGTGAAGC TTGCCTGATG GTAAGGAAAC CAGCCCTAGA ACTTCTGCAT TACCTGAAAA ACACCAGTTT TGCTTATCCA GCTATACGAT ATCTTCTGTA TGGAGAGAAG
MRPS29P2
MRPS29P1 T ATATTTTAGA TGGAGAGAAG
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .........t at.tt.t..a tggagagaag
391 520
MRPS29 GGAACAGGAA AAACCCTAAG TCTTTGCCAT GTTATTCATT TCTGTGCAAA ACAGGACTGG CTGATACTAC ATATTCCAGA TGCTCATCTT TGGGTGAAAA ATTGTCGGGA TCTTCTGCAG TCCAGCTACA
MRPS29P2
MRPS29P1 GGAACCGGAA AAACACTCGG TCTTTGCCAT GTTATTCATT TCTGTGCAAA ACAGGACTGG CTGATACTAC GTATTCCAGA TGCTCATCTT TGGGTGAAAA ATTGCCGGGA TGTTCTGCAG TCCAACTACA
Consensus ggaac.ggaa aaac.ct..g tctttgccat gttattcatt tctgtgcaaa acaggactgg ctgatactac .tattccaga tgctcatctt tgggtgaaaa attg.cggga t.ttctgcag tcca.ctaca
521 650
MRPS29 ACAAACAGCG CTTTGATCAA CCTTTAGAGG CTTCAACCTG GCTGAAGAAT TTCAAAACTA CAAATGAGCG CTTCCTGAAC CAGATAAAAG TTCAAGAGAA GTATGTCTGG AATAAGAGAG AAAGCACTGA
MRPS29P2
MRPS29P1 ACAAACAGCG CTTTGATCAA CCTTTAGAGG TTTCAACCTA GCTGAAGAAT TTCAAAACTA CAAATGAGCA CTTCCTG
Consensus acaaacagcg ctttgatcaa cctttagagg .ttcaacct. gctgaagaat ttcaaaacta caaatgagc. cttcctg... .......... .......... .......... .......... ..........
651 780
MRPS29 GAAAGGGAGT CCTCTGGGAG AAGTGGTTGA ACAGGGCATA ACACGGGTGA GGAACGCCAC AGATGCAGTT GGAATTGTGC TGAAAGAGCT AAAGAGGCAA AGTTCTTTGG GTATGTTTCA CCTCCTAGTG
MRPS29P2 A ATAGGGCATA ACACGGGTGA GGAACACCAC AGATGCAGCT GGAATTGTGC TGAAAGAGCT AAAGAGGCAA AGTTCTTTGG GTGTTTTTCA CCTGCTGGTG
MRPS29P1
Consensus .......... .......... .........a a.agggcata acacgggtga ggaac.ccac agatgcag.t ggaattgtgc tgaaagagct aaagaggcaa agttctttgg gt.t.tttca cct.ct.gtg
781 910
MRPS29 GCCGTGGATG GAATCAATGC TCTTTGGGGA AGAACCACTC TGAAAAGAGA AGATAAAAGC CCGATTGCCC CCGAGGAATT AGCACTTGTT CACAACTTGA GGAAAATGAT GAAAAATGAT TGGCATGGAG
MRPS29P2 GCCGTGGATG GAATCAATGC TCTTTGGGGA AGGACTGCTC TGAAAAGAGA AGATAAATGC CCGATTGCCC CAGAGGAATT AGCACTTGTT CACAACCTGA GGAAAATGAT GAAAAATGAT TGGCATGGAG
MRPS29P1
Consensus gccgtggatg gaatcaatgc tctttgggga ag.ac..ctc tgaaaagaga agataaa.gc ccgattgccc c.gaggaatt agcacttgtt cacaac.tga ggaaaatgat gaaaaatgat tggcatggag
911 1040
MRPS29 GCGCCATTGT GTCGGCTTTG AGCCAGACTG GGTCTCTCTT TAAGCCCCGG AAAGCCTATC TGCCCCAGGA GTTGCTGGGA AAGGAAGGAT TTGATGCCCT GGATCCCTTT ATTCCCATCC TGGTTTCCAA
MRPS29P2 GTGCCATTGT GTTGACTTTG AACCAGACTG GGTCTCTCTT TAAGCCCCGG AAAGCCTATC TGCTCCAGGA GTTGCTGGTA AAGGAAGGAT TTGATGCCCT GGATCCCTTT ATTCCCATCC TGGTTTCCAA
MRPS29P1
Consensus g.gccattgt gt.g.ctttg a.ccagactg ggtctctctt taagccccgg aaagcctatc tgc.ccagga gttgctgg.a aaggaaggat ttgatgccct ggatcccttt attcccatcc tggtttccaa
1041 1170
MRPS29 CTATAACCCA AAGGAATTTG AAAGTTGTAT TCAGTATTAT TTGGAAAACA ATTGGCTTCA ACATGAGAAA GCTCCTACAG AAGAAGGGAA AAAAGAGCTG CTGTTCCTAA GTAACGCGAA CCCCTCGCTG
MRPS29P2 CTATAACCCA AAGGAATTTG AAAGTCGTAT TCAGTATTGT TTGGAAAACA ATTGGCTTTA ACATGAGAAA GCTCATACAG AAGA---GAA AAAAGAGCTG CTGTTCTTAA ATAACGCAAA CCCCTCGCTG
MRPS29P1
Consensus ctataaccca aaggaatttg aaagt.gtat tcagtatt.t ttggaaaaca attggctt.a acatgagaaa gctc.tacag aaga...gaa aaaagagctg ctgttc.taa .taacgc.aa cccctcgctg
1171 1197
MRPS29 CTGGAGCGGC ACTGTGCCTA CCTCTAA
MRPS29P2 CTGGAGTGGT GCTGTGCCTA CCTCTAA
MRPS29P1
Consensus ctggag.gg. .ctgtgccta cctctaa