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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1306 Check: 0 ..
Name: MRPS5 Len: 1306 Check: 4230 Weight: 0.64
Name: MRPS5P3 Len: 1306 Check: 8367 Weight: 0.64
Name: MRPS5P2 Len: 1306 Check: 5130 Weight: 1.18
Name: MRPS5P4 Len: 1306 Check: 5130 Weight: 1.18
Name: MRPS5P1 Len: 1306 Check: 947 Weight: 1.37
Name: Consensus Len: 1306 Check: 5493 Weight: 0.00
//
1 130
MRPS5 ATGGCGACCG CGGTGCGCGC TGTGGGCTGC CTCCCCGTGC TGTGTAGCGG GACGGCAGGT CATTTATTGG GGAGGCAGTG TTCCCTAAAC ACCTTACCAG CAGCTTCCAT TTTGGCATGG AAGAGTGTTC
MRPS5P3 ATGGTGACGG CGGTGCGCGC TGTGGGCCGC CTCCCTGCGC TGTGCAGCGG GACAGCGGGT CATTTATTGG GGAGGCAGCT TTCCCTAAAC ACCTTACCAA CAGCTTCCAT TTTGGCATGG GAGACTGCTC
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
131 260
MRPS5 TCGGCAATGG CCATTTGTCA TCACTGGGAA CCAGAGACAC CCATCCCTAC GCCAGCTTGA GCCGTGCACT GCAGACACAA TGCTGTATTT CTTCTCCCAG TCACCTGATG AGCCAGCAGT ATAGACCATA
MRPS5P3 TCAGCAATGG CCCTTTGTCA TCACTGGGAA CCAGAGACAT CCGTCCTTAT GCCAGCTTGA GCCGTACGTT GCAGACACTA TGCTGTATTT CTTCTCCCAG TCATCTGATG GGCCAGCAGT ATAGACCGTA
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
261 390
MRPS5 TAGTTTCTTC ACTAAATTGA CTGCAGATGA G--CTGTGGA AAGGCGCTTT AGCAGAGACT GGTGCTGGAG CAAAAAAAGG AAGAGGCAAA AGAACTAAAA AGAAGAAAAG AAAGGATCTG AACAGGGGTC
MRPS5P3 CAGTTTCTTC ACTAAATTGA CTGTAGATGA GAGCTGTGGA AAGGTGCTTT AGCAGAGACT GGTGCCGGAG CAAGAAAAGG AAGAGGCAAA AGAACTAAAA AAAAGAAAGG AAAGGATCTG AACAGGGGTC
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
391 520
MRPS5 AGATCATTGG TGAAGGGCGT TATGGTTTTC TATGGCCCGG ACTGAATGTC CCTCTTATGA AAAATGGAGC AGTGCAGACC ATTGCCCAAA GAAGCAAGGA AGAGCAGGAG AAGGTGGAGG CAGACATGAT
MRPS5P3 AGATCATTGG TGAAGGGCGT TATGGTTTTC TGTGGCCTGA TCTGAATGTC CCTCTTATGA AAAATGAAGT AAAGCAGACC ATTGCCCAAA GAAGCAAGGA AGAGCAGGAG AAGGTGGAGG CGGACATGAT
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
521 650
MRPS5 CCAGCAGAGA GAAGAGTGGG ACCGAAAGAA GAAGATGAAG GTTAAACGGG AGCGAGGATG GAGTGGAAAC TCATGGGGAG GCATCAGTCT TGGCCCCCCT GACCCTGGTC CCTGTGGAGA AACATATGAG
MRPS5P3 CCAGCAGAGA --AGAGTGGG ACCTAAAGAG GAAGATGAAG ATTAAATGGG AGCGAGGAAG GAGTGGAAAC TCATGGAGAG GCATCAGTCA TGGCCCCACT GACCCTGGTT CCAATGGAGA AACATATGAG
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
651 780
MRPS5 GATTTTGATA CCAGGATACT TGAGGTAAGA AACGTTTTCA CTATGACTGC G-AAAGAGGG AAGAAAGAAA TCGATCCGTG TCTTGGTGGC TGTGGGGAAC GGAAAAGGAG CTGCAGGTTT TTCTATTGGG
MRPS5P3 GATTTTGATA CCAGGATACT TGAAGTAAGA AATGTTTTCA ATATGACAGC GGAAAGAGGG AAGAAAGAAA TCGGTCCGTG TCCTGGTGGC TGTGGGGAAC GGAAAAGGAG CTGCAGGTTT TGCTGTTGGG
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
781 910
MRPS5 AAAGCTACTG ATCGGATGGA TGCTTTCAGG AAAGCAAAGA ACAGAGCAGT TCACCATTTG CATTATATAG AACGATATGA A--------- -GACCATACA ATATTCCATG ATATTTCATT AAGATTTAAA
MRPS5P3 AAAACCACTG AACGGGTGGA CGCTTTTAGG AAAGCAAAGA ACAGAGCAGT TCACTATGTG CATTATGTAG AACGATATGA ATATTGTATA AGACCATATA ATTTTCCATG ATATTTCATT AAGATTTAAA
MRPS5P2
MRPS5P4
MRPS5P1
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
911 1040
MRPS5 AGGACGCATA TCAAGATGAA GAAACAACCC AAAGGTTACG GCCTCCGCTG CCACAGGGCC ATCATCACCA TCTGCCGGCT CATTGGCATC AAAGACATGT ATGCCAAGGT CTCTGGGTCC ATTAATATGC
MRPS5P3 AGGACACATA TCAAGATGAA GAAACAACCC AAAGGTTACG GCCTCCACTG CCACAGGGCC ATCATCACCA TCTGCAGTAT CATTTGCATC AAAGACATGT ATGCCAAGGT CTCTGGGTCC GTCAATATGC
MRPS5P2 TATTA AATACTGCTA TCA----GCC ATCATCACCA TCTGCTGGCT CATTGGCATC AAAGACTTGT ATGCCAAGGT CTTTGGGTCC GTCAGTATGC
MRPS5P4 TATTA AATACTGCTA TCA----GCC ATCATCACCA TCTGCTGGCT CATTGGCATC AAAGACTTGT ATGCCAAGGT CTTTGGGTCC GTCAGTATGC
MRPS5P1 AGGTTACG GCCTCCGCTG CCACAGGGCC ATCATCACCA TCTGCCGGCT CATTGGCATC AAAGACATGT ATGCCAAGGT CTCTGGGTCC ATTAATATGC
Consensus .......... .......... .......... ..aggTtacg gcctCcgCTg cCAcaggGCC ATCATCACCA TCTGC.GgcT CATTgGCATC AAAGACaTGT ATGCCAAGGT CTcTGGGTCC gTcAaTATGC
1041 1170
MRPS5 TCAGCCTCAC CCAGGGCCTC TTCCGTGGGC TCTCCAGACA GGAAACCCAT CAACAGCTGG CTGATAAGAA GGGCCTCCAT GTTGTGGAAA TCCGGGAGGA ATGTGGCCCT CTGCCCATTG TGGTTGCGTC
MRPS5P3 CCAACCTCAC CTGGGGCCTC TTCCATGGGC TCTCCAGACA GAAAACCCAT CAACAGCTGG CTGTTAAGAA GGGCCTCCAT GCTGTGGAAA TCCAGGAGGA ATGTGGCCCT CTGCCTATCC TGGTTACCTC
MRPS5P2 CCAACCTCAC CTGGGGCCTC TTTCGTGGGC TCTCCAGCCG GGAAATCCAT CAACAGCTGG CTGATAAAAA GGGCCTCTAC ---------- ---------A TTGTGGCCCT CTGCCTGGAG TGGTTGCCTA
MRPS5P4 CCAACCTCAC CTGGGGCCTC TTTCGTGGGC TCTCCAGCCG GGAAATCCAT CAACAGCTGG CTGATAAAAA GGGCCTCTAC ---------- ---------A TTGTGGCCCT CTGCCTGGAG TGGTTGCCTA
MRPS5P1 TCAGCCTCAC CCAGGGCCTC TTCCGTGGGC TCTCCAGACA GGTAATCCTT
Consensus cCAaCCTCAC CtgGGGCCTC TTcCgTGGGC TCTCCAGaCa GgaAAtCCaT caacagctgg ctgataa.aa gggcctc.a. .......... .........a .tgtggccct ctgcct...g tggttgcct.
1171 1300
MRPS5 CCCCCGGGGG CCCTTGAGGA AGGATCCAGA GCCAGAAGAT GAGGTTCCAG ACGTCAAACT GGACTGGGAA GATGTGAAGA CTGCACAGGG AATGAAGCGC TCTGTGTGGT CTAATTTGAA GAGAGCCGCC
MRPS5P3 CTCCCGGGGG GCCTTAAGTA AAGATCCGGA GACAAATGAT GAGGTTCCAG ACATCAAACT GGACTGGAAA GATGTGAAGA CTGCACAGGG AGAGAAACGC TCTCTCTGGT CTGGTTTAAA GAGAGCCGCC
MRPS5P2 CCCCTGGGGG CCCTTGAGAA ATGATCCAGA GCTGGATGAT TAGGTTCCAG ACATCAATCT GGACTAGGAA GAAGTGAAGG CTGTGCAGCG AATGAAGTGC TCTGTATGGT CCAGTTTAAA GAGAGTTGCC
MRPS5P4 CCCCTGGGGG CCCTTGAGAA ATGATCCAGA GCTGGATGAT TAGGTTCCAG ACATCAATCT GGACTAGGAA GAAGTGAAGG CTGTGCAGCG AATGAAGTGC TCTGTATGGT CCAGTTTAAA GAGAGTTGCC
MRPS5P1
Consensus cccc.ggggg cccttgag.a a.gatccaga gc..gatgat .aggttccag acatcaa.ct ggact.ggaa ga.gtgaag. ctg..cag.g aatgaag.gc tctgt.tggt c.agtttaaa gagag..gcc
1301
MRPS5 ACGTAA
MRPS5P3 ACCTAA
MRPS5P2 AGGTAA
MRPS5P4 AGGTAA
MRPS5P1
Consensus a.gtaa