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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 379 Check: 0 ..
Name: MRPS6 Len: 379 Check: 6053 Weight: 0.86
Name: MRPS6P2 Len: 379 Check: 1397 Weight: 0.86
Name: MRPS6P1 Len: 379 Check: 7226 Weight: 0.75
Name: MRPS6P3 Len: 379 Check: 7226 Weight: 0.75
Name: MRPS6P4 Len: 379 Check: 3241 Weight: 1.79
Name: Consensus Len: 379 Check: 1367 Weight: 0.00
//
1 130
MRPS6 ATGCCCCGCT ACGAGCTGGC TTTAATCCTG AAAGCCATGC AGCGGCCAGA GACTGCTGCT ACTTTGAAAC GTACGATAGA GGCCCTGATG GACAGAGGAG CAATAGTGAG GGACTTGGAA AACCTGGGTG
MRPS6P2 ATGCCCCGCT ATAAGCTGGC TTTAATCCTG AAAGCCATGC CGCGGCCAGA --CTGCTGCT GCTTTGAAAC ATACGATAGA GGTTCTGATG GAAAAAGGAG CAATAGTGAG GAACTTGGAA AACCTGGGTG
MRPS6P1 ATGCCTGGCT ATAAGCTGGC TTTAATCTTG ACAGCCATGC CGCAGCCAGA GACTACTGCT GCTTTGAAAA GTATGATACA AGCCCTGATG AACAGAGGAG CAATAGTGAG GGACTTGCAA AACCTGGGCA
MRPS6P3 ATGCCTGGCT ATAAGCTGGC TTTAATCTTG ACAGCCATGC CGCAGCCAGA GACTACTGCT GCTTTGAAAA GTATGATACA AGCCCTGATG AACAGAGGAG CAATAGTGAG GGACTTGCAA AACCTGGGCA
MRPS6P4 ATGCCCTGCT TACTGTTGGC TTTGATTCTG AAAGCC-TAC AGCTGCCAGA GACAGCT-CT ---------- ---------- -GTCCCAATA GACGTGGGAG CAATAGCGAG AAACTTAGAA AATCTGGCCA
Consensus ATGCCc.GCT a..aGcTGGC TTTaATccTG AaAGCCaTgC aGC.GCCAGA gaCtgCTgCT .ctttgaaa. .ta.gata.a .GtcCtgATg gAca.aGGAG CAATAGtGAG gaACTTggAA AAcCTGGgca
131 260
MRPS6 AA-CGAGCGC TTCCTTATAG GATCTCTGCC CACAGTCAGC AGCACAACAG AGGCGGGTAT TTCTTGGTGG ATTTTTATGC ACCCACCGCA GCTGTTGAAA GCATGGTGGA GCACTTGTCT CGAGATATAG
MRPS6P2 AG-TGAGCGC TTCCTTGTAA GATCTCCACC CACAATCAGT GGCACAACAG AGGCGGGTAT TTCCTGGTGA ATTTTTATGC ACCAACCACA ACTGTTGAAA GCATGATGGA GCACTT--CT CCAAACGTAG
MRPS6P1 AA-TGAGCAC TTCCTTATAA GATCTTCGTC AACA------ -GCACAGCAG AGGTGGGTAT TTCTTGGTGA ATTTTTATGC ACCAACCACA ACTGTTGAAA GCATGATGGA GCACTTGTCT AGAGATGTAG
MRPS6P3 AA-TGAGCAC TTCCTTATAA GATCTTCGTC AACA------ -GCACAGCAG AGGTGGGTAT TTCTTGGTGA ATTTTTATGC ACCAACCACA ACTGTTGAAA GCATGATGGA GCACTTGTCT AGAGATGTAG
MRPS6P4 AAATGAGCAT TTCCTTATTA GATCTCCATC TACTGTCAAC AGCATAATAG CAGATAATAT TTCTTGGTGG ATTTTTATGC ACCAAC---A TCTGTTGAAA GTATAATGGA ATTTTTTTCT CAAGACATTG
Consensus Aa.tGAGCac TTCCTTaTaa GATCTccatC .ACagtca.c aGCAcAacAG agG.gggTAT TTCtTGGTGg ATTTTTATGC ACCaACc.cA .CTGTTGAAA GcATgaTGGA gcacTT.tCT c.AgAcaTaG
261 379
MRPS6 ATGTGATTAG AGGGAATATT GTCAAACACC CTCTGACCCA GGAACTAAAA GAATGTGAAG GGATTGTCCC AGTCCCACTC GCAGAAAAAT TATATTCCAC AAAGAAGAGG AAGAAGTGA
MRPS6P2 ATGTGATTAG ACCGAATATT GTCAAACACC CTCTGACCCA GGAACTAAAA GAATGTGAAG GGATTGTCCC AATCCCACTT AAAGGAAAAT TATATTACAC AAAGAAGAGG AAGAAGTGA
MRPS6P1 ATGTGATTGG ACAGAGTACT GTAAAACA-- -----TCCCA GGAACTAAAA GAATATGAAG AGATTGTCCT AGTCTCACTT GAAGAAAAAC TGTATTCCAC AAAGCAGCAG CAGTGAGGG
MRPS6P3 ATGTGATTGG ACAGAGTACT GTAAAACA-- -----TCCCA GGAACTAAAA GAATATGAAG AGATTGTCCT AGTCTCACTT GAAGAAAAAC TGTATTCCAC AAAGCAGCAG CAGTGAGGG
MRPS6P4 ATATGATTAG ACCTAATATT GTAAACCACC TACTAACCCA GGAAGTAAAA GAGTATAAAG GAATTTTCCT GGTC
Consensus ATgTGATTaG AccgAaTAtT GTaAAaCAcc ..ct.aCCCA GGAAcTAAAA GAaTaTgAAG ggATTgTCCt agTC.cact. ..ag.aaaa. t.tatt.cac aaag.ag..g .ag....g.