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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 421 Check: 0 ..
Name: MRP63_CDS Len: 421 Check: 1366 Weight: 0.86
Name: MRP63_mRNA Len: 421 Check: 4842 Weight: 0.78
Name: chr13_MRP63.2 Len: 421 Check: 9731 Weight: 0.78
Name: MRP63P6 Len: 421 Check: 8909 Weight: 1.18
Name: MRP63P3 Len: 421 Check: 7649 Weight: 1.21
Name: MRP63P9 Len: 421 Check: 3928 Weight: 1.21
Name: MRP63P1 Len: 421 Check: 5257 Weight: 1.26
Name: MRP63P2 Len: 421 Check: 7195 Weight: 0.96
Name: MRP63P4 Len: 421 Check: 2380 Weight: 0.75
Name: MRP63P5 Len: 421 Check: 907 Weight: 0.75
Name: MRP63P10 Len: 421 Check: 1720 Weight: 0.77
Name: MRP63P7 Len: 421 Check: 695 Weight: 1.24
Name: MRP63P8 Len: 421 Check: 386 Weight: 1.24
Name: Consensus Len: 421 Check: 4920 Weight: 0.00
//
1 130
MRP63_CDS A TGTTC-CTGA CTGCGCTCCT CTGGCGCGGC CGCATTCC-- --------CG GCCGTCAGTG --GATCGGGA AGCA-CCGGC
MRP63_mRNA GCG GCAGGCACCA TGTTC-CTGA CTGCGCTCCT CTGGCGCGGC CGCATTCC-- --------CG GCCGTCAGTG --GATCGGGA AGCA-CCGGC
chr13_MRP6 GCCAGT TCGCCTCCGC AAAGCCCGTC CCTCTCTTCC GCAGGCACCA TGTTC-CTGA CTGCGCTCCT CTGGCGCGGC CGCATTCC-- --------CG GCCGTCAGTG --GATCGGGA AGCA-CCGGC
MRP63P6 AGATTCCAGA GGGAATCCA- GATGCAGATT CCA---GAGG GCAGGCACCA TGTTT-CTGA CCACCCTCTT CATCCGTACT CACATACC-- --------TG CTAGACAGTG --GATCGGGA TGCA-CTGGT
MRP63P3 CTATTAAAAA G--CTATTAT AAATGCTCAC AGTTATGAAA GAAAACATGA ACACA-GTGA AGAAATTAAA ACTACTGGGC CAAAGGGA-- --------CA GACTCCTGAG AAGCACAGGT GGCATCATGT
MRP63P9 TAGTACCAA GTACTGGGAA GCAGGGAAGA AGTGAAGGAA AAGGTTAATG ACAGC-CTGA GGACACTTGG CCTCCAA--C CTTATCCC-- --------CA GT-TCCTGC- -AGCTGAGCA --CAACCAGC
MRP63P1 TTTAGAAGC GTG-TTGTTT AGGGA----- ---CTCTTCC T--------- -GTGGATG-- --------CA GGCACCATG- --TCCTTGAC TGCCCTCCTC
MRP63P2 CCTGG GTACCGGGAT GATGATGGCA CTTGGCATGT GAGCTAGGAT TGGGTGCCCA TCGCTCTTCC CCA-CCAGGC AGTGGCCAG- --------CT AGTTTCTGT- --CCCCTTAC CGACCTCCTT
MRP63P4 CTCTCTTCC CCAGTGAGGC GGTGGCCAGT TACCATCTCT GGCTTCTGT- --CCCCTTAC CAGCCTCCTC
MRP63P5 ACTCTCTTCC CCAGGGAGGT GGTGGCCAGT TACCATCTCT GGCTTCTGT- --CCCCTTAC CAGCCTCCTC
MRP63P10 CTCTCTTCC CCAGCCAGGC GGTGGGCAGT TACCATCTCT GGCTTCTGT- --GACCTTAC CAGCCTCCTC
MRP63P7 GTGGCCA AAACGACTTG GCTGTCTGAT GAG------- ---TGCAGCC C--------- ---------- --------CA GGCTCCAAG- --TTCCTGAC TGCCCTCCTC
MRP63P8 TGTTTCCA CCATG-CAGA GAGTCCTAAG GGG------- ---CTCGGCC A--------- ---------- --------CA TGCACCATG- --TTCCTGAC TGCCTTCCTC
Consensus .......... .......... ...g...... .......... g......... .g... ...a ...c.Ct.cc c...c..ggc .g....c... ........C. ggct.Cagt. .g.cctgac .gcc.tcctc
131 260
MRP63_CDS GGCCGCGGTT CGTGTCGTTG CGCGCCAAGC AGAACATGAT CCGCCGCCTG --GAG--ATC GAGGCGGAGA ACCATTACTG GCTGAGCATG CCCTACATGA CCCGGGAGCA GGAGCGCGGC CACGCCGC--
MRP63_mRNA GGCCGCGGTT CGTGTCGTTG CGCGCCAAGC AGAACATGAT CCGCCGCCTG --GAG--ATC GAGGCGGAGA ACCATTACTG GCTGAGCATG CCCTACATGA CCCGGGAGCA GGAGCGCGGC CACGCCGC--
chr13_MRP6 GGCCGCGGTT CGTGTCGTTG CGCGCCAAGC AGAACATGAT CCGCCGCCTG --GAG--ATC GAGGCGGAGA ACCATTACTG GCTGAGCATG CCCTACATGA CCCGGGAGCA GGAGCGCGGC CACGCCGC--
MRP63P6 GGCTGCTGCC CCT--CATTG CACACCAAGC AGAACATGAT CTATTGCCTA --CAG--ATC AGGGTGGAAA ATCACTACTG GCTGTAAATA CCCTA-TTGA CCTTGGAGCA GCAGCATGGC CATGCTGCTG
MRP63P3 TCCTGACTGT CCTCCCCAAC CACAGTA-GC ATTCCTGGTG GCAGTAG--- --ATT--GGT CATCTGGAGA ACCACTACTG GCTGAGCATG CCCTACCTGA CCACAGGGCA GGAGTA-GGC TACACTGT--
MRP63P9 ACATGACCGC CCTCCTGCTG GCAGGCA-AC GTATCAGGAA GCACTGGCAG CCATG--GAC CGTGTGGAGA ACCACAACTA GCTGAGAATG CCCTACATGA CTGCGAGACA GGATTGCAGC CAGGCCAT--
MRP63P1 TGCTGCAATC ACATTTCTGG TA-GGCAGTG GATCAGGGAA GCACCAGCAG CTGTG--AAC CATGTGGAGA AACACTACTG GCCGAGCATG CCCTACCTGA CTGTGGGACA AGAGTACAGC AGTGCTGA--
MRP63P2 TGCTACAATT GCATTTCTGG CA-GGCAGTG TATCAAGGAA GCATCCGCAG TTTTG--GAC CATGCAGAGA ACCACTACTG GCCAAGCATT CCCAATCTGA CAGCAGAACA G---TACAGC ACTGCTGA--
MRP63P4 TGCTACAATT GCATTTCTGG CA-GGCAGTG GATCAGGGAA GCACCGGCAG TTGAG--GAC CATGTGGAGA ACAACTACTG GCCAAGCATT CCCAACCTGA CAGCAGAACA GGGGTACAGC AGTGCTGA--
MRP63P5 TGCTACAATT GCATTTCTGG CA-GGCAGTG GATCAGGGAA GCACTGGCAG TTGAG--GAC CATGTGGAGA ACCACTACTG GCCAAGCATT ACCAACCTGA CAGCAGAACA GGAGTGCAGC AGTGCTGA--
MRP63P10 TGCTACAATT GCATTTCTGG CA-GGCAGTG GATCAGAGAA GCACTGGCAG TTGAG--GAC GATGTGGAGA ACCACTACTG GCCAAGCATT CCCAACCTGA CAGCAGAACA GAAGTACAGC AGTGCTGA--
MRP63P7 TGTTGCTGTG GCATTCCTGG AA-GGCAGTG GATC-TGGAA GCACTGGCGG CCGCGCTGCA GACCATGAGA ACTACTACTG AACAAGCGTG TCCTATCTGA CCACGGGGCA GGAGCACAAC CACGCTGT--
MRP63P8 TGCTGCAGTC GCATTCCTGG CA-GGCAGTG GACT-GGGAA ACACCAGTGG TCGCA--GAC TGTATGGAGA ACCT-TACTG GCTGGGCGTG CCCTATCTGA TCACAGGACA GGAGTAAGGT CACAGCAT--
Consensus tgctgc..tt .cattcctgG ca.ggCAgtg gatc..gGAa gCaccggc.g ..g.g gac .atgtgGAGA AccAcTACTG GCtgaGcaTg cCCtAccTGA Cc.cgGaaCA GgagtacaGC ca.gCtg.
261 390
MRP63_CDS -GGTGCGCAG GAGGGAGGCC TTCGAGGCCA TAAAGGCGGC CGCCACTTCC AAGTTCCCCC ---------- -CGCATAGAT TCATTGCGGA CCAGCTCGAC CATCTCAATG TCACCAAGAA ATGGTCCTAA
MRP63_mRNA -GGTGCGCAG GAGGGAGGCC TTCGAGGCCA TAAAGGCGGC CGCCACTTCC AAGTTCCCCC ---------- -CGCATAGAT TCATTGCGGA CCAGCTCGAC CATCTCAATG TCACCAAGAA ATGGTCCTAA
chr13_MRP6 -GGTGCGCAG GAGGGAGGCC TTCGAGGCCA TAAAGGCGGC CGCCACTTCC AAGTTCCCCC ---------- -CGCATAGAT TCATTGCGGA CCAGCTCGAC CATCTCAATG TCACCAAGAA ATGGTCCTAA
MRP63P6 CAGTGTGCAG GGCAGAGGCC ATGGAGCCCA TGAAGGTGGC CAATACTTCC AAGGTCCCCC ---------- -AACATAGAT CTGTTGTAGA CAAGATTGAC CATCTCAATG TCATCCAGAA ATGGTCCTAA
MRP63P3 -AGTGCACAG GGCAGAGGCC TTTGAGGCCA TGAAGACAGC CAACACTTCC AAGTTCCCCT ---------- -CACATAGAT TTGTTGTAGA CTAGCTCGAC CATCTCAATG TCACCAACAA ATGGTCCTAA
MRP63P9 -GGTGTGCAG GGTGGAGGCC TTAGAGGCCA TGATGGTGGC CAGC--TTCC AAGTTCCTCC ---------- -CACATAGAT TTGCTGTCGG TCACCTCAAC CGTGTAAATG TCACCAAGAA ATGGTCCTAA
MRP63P1 -GGTGCACTT GGCAGAGCCC TTTGAGGCTG TGAAAGCGGC CAATATTTCC AAGTTGCCTC ----TGTAT- --AGATAGAT TTGTTATAAA CCAGCTCAGT CATCTCAGTG TCAACAAGAA GTTGTCATCT
MRP63P2 -GGTGAACTT GGCAAAGAAC TTTGAGACCA TGAAGGCAGC CAACACTTCC AAGTCATCAC AACCTGCTTC TCCCATAGAT TTATTGTAGA CCATCTCAAC CATCTCCATG TCAACAAGAA ATGGTCCTCA
MRP63P4 -GGTGAACTT GACAGAGAAA TTTGAGACCA TGAAGGCAGC CAACACTTCC AACTTATCAC AACCTGCCTC TCACATAGAT TTATTGTGGA AGAACTCAAC CATCTCCGTG TCAACAAGAA ATGGTCCTCA
MRP63P5 -GGTGAACTT GACATAGAAC TTTGAGACCA TGAAGGCAGC CAACACTTCC AACTTATCAC AACCTGTCTC TCACATAGAT TTATTGTAGA AGAACTCAAC CATCTCCGTG TCAACAAGAA ATGGTCCTC-
MRP63P10 -GGTGAACTT GACGGAGAAC TTTGAGACCA TGAAGGCAAC CATCACTTCC AACTCATCAC AACCTGCATC TCCCACAGAT TTATTATAGA AGAACTCAAC CATCTCTGTG TCAACAAGAA ATGGTCCTCA
MRP63P7 -GGTGCACAG GGCTGAGGCC TTCCATGCCG TGAAGGCAGT CAACACTTCC AAGTTCTGCC ---------- -CTCATAGAT TTGTTGTAGA CCAGCTAAAC CATCACAATG TCACCAAGAA ACGGCCCTAA
MRP63P8 -GGTGTGCAG AGCTAAGGTC TTCAAGGCCA TGAAGGTGGC CAACACTTCC AAGTTCT-CC ---------- -TGTATATAT TTGTTCTAGA GCAGCCCAAC CATCTCAACA TTACCAAGAA ATGGCCCTAA
Consensus gGTG.aCag Ggc.gAGgcC TT.gAGgCCa TgAAGGcgGC CaacAcTTCC AAgTtccccC .......... .c.cATAGAT TtgTTgtaGA ccAgCTcaAC CATCTCaaTG TCAcCAAGAA ATGGtCCTaa
391 421
MRP63_CDS
MRP63_mRNA T
chr13_MRP6 TCCTGAGTCG TCACCCTTGG ATTTTATG
MRP63P6 CTCTGAGTCA TTACCTTTTG ATTTTATA
MRP63P3 CCCTGAACTA TCAAACACCC CCAAACT
MRP63P9 CCCTGAGCCA TCACACTTCG ATTTTTAT
MRP63P1 TCTTGTTGAA TCATCAACAC CTTGATG
MRP63P2 CTCTAAGCCA TCACCTTTGG ATTTAGA
MRP63P4 CTCTAAACCA TCACCCTTGG ATTTAGAT
MRP63P5 ---TAAACCG TCACTCTTGG ATTTAGATCA T
MRP63P10 CTCTACACCA TCACCCTTGG ATTTCGAT
MRP63P7 CTCTGAGCCA TA-ACTCTAG ATTTTATA
MRP63P8 CCCTGAGCCA TCGACTTTCA ATTTTAT
Consensus c.ctgagcca tca.c.tt.g attt....