Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 880 Check: 0 ..
Name: MRPL11_CDS Len: 880 Check: 570 Weight: 0.63
Name: MRPL11_mRNA Len: 880 Check: 6554 Weight: 0.63
Name: MRPL11P2 Len: 880 Check: 2037 Weight: 1.22
Name: MRPL11P1 Len: 880 Check: 6597 Weight: 1.26
Name: MRPL11P3 Len: 880 Check: 6465 Weight: 1.26
Name: Consensus Len: 880 Check: 9236 Weight: 0.00
//
1 130
MRPL11_CDS ATGTCAAAGC TCGGCCGGGC CGCCCGGGGC CTCAGGAAGC C-----CGAG
MRPL11_mRN TGGT--GGC GCCCAGA-GC TTCGCTCTTG CTGCTCCCCT GAGGTGAACT GAAGCCAGCA GCCCCGCATC ATGTCAAAGC TCGGCCGGGC CGCCCGGGGC CTCAGGAAGC C-----CGAG
MRPL11P2 TTCAATTCTT TTGGACATGC ACCCAGAAGT TATGTTGATA GATCGGCCCT GAGGTGAACT AAAGCCAGCA GCCCCACATC ATGTCAAAGT TCGGCCGGGC CACCCGGGGC CTCAGGAAGC C-----CGAG
MRPL11P1 CACTATG GAATACTATG TAGCCATAAA AAAGGACTGA GATCGTGTCT TTTGCAGAGA NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
MRPL11P3 CTTCTCCA GAAAGCTTTG CCCAATTGAA GCATCTCTCC GTCTCTCTCT CAACCTGATT TTTGTGTTTT TCTAAAAATA ATTTATAATC TTCTCAGAAA AGCCAGCAAA CACTTACTAT CTTAATCAAT
Consensus .....ct... gaa..ct.tg .ccca.t.aa ..ag.tct.. g..c.tctct .a.gc.ga.t ...g...... .c.....at. at.t..aa.c t...c.g... .gcc.g.... c.c....... c.....c.a.
131 260
MRPL11_CDS GTCGGCGGTG TGATCCGGGC -GATCGTGCG GGCAGGCCTG GCCATG---C CTGGGCCCCC --ACTAGGCC CAGTGCTGGG TCAGAGAGGC GTTTCCATCA ACCAGTTTTG CAAGGAGTTC AAT---GAGA
MRPL11_mRN GTCGGCGGTG TGATCCGGGC -GATCGTGCG GGCAGGCCTG GCCATG---C CTGGGCCCCC --ACTAGGCC CAGTGCTGGG TCAGAGAGGC GTTTCCATCA ACCAGTTTTG CAAGGAGTTC AAT---GAGA
MRPL11P2 GTCGGCGATG TGATCCGGAC -CATCGTGCG GGCAGGCCTG GCCATG---C CCGGGCCCCC --ACTAGGCC CAGTGCTGGG TCAGAGAAGG GCTTCCATCA ACCAATTTTG CAAGGAGTTC AAT---GAGA
MRPL11P1 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN CTCAAATCTT TTTTTTTTTA CTGGGAGCAT GGAGATGAGT AAATCTGACC CCTGTCCTGG GAGAGACACA CATGCTCAGC CCCGTGACGT CATT--GTAC
MRPL11P3 TTAAGCAGAC TATTTAAAGC TCATCATGTG GTTCATTCAG GATCTATGTC AAAGGCTGAG TTCCAAGGAG ACATCTACAG TCAGTTA-GG GTTAAATAAT TGTTCCCTTA CCGAAAGAGC AATTCGGGAG
Consensus .t..gc.g.. t..t....gc ..atc.tg.g gtcaa.tCtg g.t.T.t.tc ctgGGc.ca. ..acaaGg.. aaaTct...g tCaGt.a.Gg Gtta.a.aca ..t.ctctt. Cc.g.ag.gc aATt..G.a.
261 390
MRPL11_CDS GGACAAAGGA CATCAAGGAA GGCATTCCTC TG--CCTACC AAGATTTTAG TGAAGCCTGA CAGGAC-ATT TGAAATTAAG ATTGGACAGC CCACTGTTTC CTACTTCCTG AAGGCAGCAG CTGGGATTGA
MRPL11_mRN GGACAAAGGA CATCAAGGAA GGCATTCCTC TG--CCTACC AAGATTTTAG TGAAGCCTGA CAGGAC-ATT TGAAATTAAG ATTGGACAGC CCACTGTTTC CTACTTCCTG AAGGCAGCAG CTGGGATTGA
MRPL11P2 GGACAAAGGA CATCAAGGAA GGCATTCCTC TG--CTTACC AAGATTTTTC TGAAGCCTGA CGGGAC-ATT TGAAATCAAG ATTGGACAAC CCACTGTTTC CTACTTCGTG AAGGCAGCAG CTGGGATTGA
MRPL11P1 AGCATATTCT GGGCACAG-A GTACCCCAGT TAATCTGGAC TGGGGCCTGC TGATGCCTCA AAGGATGAGT AGGGATTTAA ---TAAGGGA ACAAAAGATA GGGGTGTTGG GGGTTGGGAG ATGTTGTCCC
MRPL11P3 ATCCATTGGT CAGTACTGCA GTTCTTTTAT TGACGTAACC TTTATTTCAT TCATACATTT ATGCAATCAT TTATTTATCT ACTTAACTAG AAATCCTATC CATTTAACCA GAAAATAAAG ATGTA-TATT
Consensus agccaatggt cagcAc.G.A Gt.cttc..t Tga.ct.acC t.gatttta. TgAtgCcT.a aaGgA..a.T tga.aTtta. a.ttaAc.g. acA...taTc c...T..c.g gag...g.AG aTGt..T...
391 520
MRPL11_CDS AAAGGGGGCC CGGCAAACAG GGAAAGAGGT GGCAGGCCTG GTGACCTTGA AGCATGTGTA TGAGATTGCC CGCATCAAAG CTCAGGATGA GGCATTTGCC CTGCAGGATG TACCCCTGTC GTCTGTTGTC
MRPL11_mRN AAAGGGGGCC CGGCAAACAG GGAAAGAGGT GGCAGGCCTG GTGACCTTGA AGCATGTGTA TGAGATTGCC CGCATCAAAG CTCAGGATGA GGCATTTGCC CTGCAGGATG TACCCCTGTC GTCTGTTGTC
MRPL11P2 AAAGGGGGCC CGGCCAACAG ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
MRPL11P1 TGGAGAGGAA ATGAGCAAAG GTATGGAGGC TGGGAAGTCA GGGAGGCAGA AGGGGCCAGG CAAGCTGGGC TTGGAGACAG GGCCCCTTCA AGCCCCTGCA AGACATAGGG TCCTGTGAGC TCCCACTGGT
MRPL11P3 TAAGACCAAA AAAAGGAAAA TAAAGGTATA TGCTCTCTCT TCAAACTAAA CTGGATTATA CAGGCATGG- GTGTAGCATG GTAAATGTGT AGGGGAAAAA AGAGAGGAGA TCACC--ATC TCAAATTTGT
Consensus taagg.ggaa a.gag.AaAg g.aaggagg. tgc...ctc. g.ga.ctaga aggg..tata caagcttggc .tg.agaaag gtca...tga agc...tgca agacaggagg tcccc..atc tcc.attggt
521 650
MRPL11_CDS CGCTCCATCA TCGGGTCTGC CCGTTCTCTG GGCATTCGCG TGGTGAAGGA CCTCAGTTCA GAAGAGCTTG CAGCTTTCCA GAAGGAACGA GCCATCTTCC TGGCTGCTCA GAAGGAGGCA GATTTGGCTG
MRPL11_mRN CGCTCCATCA TCGGGTCTGC CCGTTCTCTG GGCATTCGCG TGGTGAAGGA CCTCAGTTCA GAAGAGCTTG CAGCTTTCCA GAAGGAACGA GCCATCTTCC TGGCTGCTCA GAAGGAGGCA GATTTGGCTG
MRPL11P2 ---------- ---------- ---------- ---------- ---------- CCTCAGTTCA GAAGAGTTTG CAGCTTTCCA GAAGGAACAA GCCATCTTCC TGGCTGCTCA GAAGAAGGCA GATTTGGCCA
MRPL11P1 GACCAATCAT GCGCCAACCA TTTGTCTTTT TTCACTTGCA ---------G CCTCAGTTCA GAAGAGCTTG CAGCTTTCCA GAAGGAACGA GCCATCTTCC TGGCTGCTCA GAAGGAGGCA GATTTGGCTG
MRPL11P3 CTTGAGTCTC AAGTAAAGAA ACAAAACCGT AAGAGTCAAA ---------- CATGATTTCA TTAATGCTGG CAGCTTTCCA GAAGGAGCAA GCCATATTCC TGGCTGATCA GAAAGAGGCA GATTTGGCAG
Consensus c.c.a.tc.. .cg..aa..a .c..tctctt ..ca.tcgca .......... CcTcAgTTCA gaAgaGcTtG CAGCTTTCCA GAAGGAaCgA GCCATcTTCC TGGCTGcTCA GAAggAGGCA GATTTGGCtg
651 780
MRPL11_CDS CCCAAGAAGA AGCTGCCAAG AAGTGA
MRPL11_mRN CCCAAGAAGA AGCTGCCAAG AAGTGACCCT TGCCCCACCA ACTCCCAGAT TTCAAAGGAG GTAG------ ---------T TGCAAAAGCT GTGCCCAAGG GGAGGAAGGA GGTCACACCA ATATGATGAT
MRPL11P2 CCCAGGAGGA AGCTGCCAAG AAGTGACCCT TTCCCC--CA ACTCCTAGAT TTCAAAGGAG GCAGCTGGGA AGGGGCCAGT TGCAAAGGCT GTGCCCAAGG GGAGGAAGGA GGTCACACCA ATATGATGAT
MRPL11P1 CCCAAGAAGA AGCTGCCAAG AAGTGACCCT TGCCCCACCA ACTCCCAGAT TTCAAAGGAG GTAGT----- ---------- TGCAAAAGCT GTGCCCAAGG GGAGGAAGGA GGTCACACCA ATATGATGAT
MRPL11P3 CCCAGGGAGA AGCTGCCAAG AAGTGACTCC TGACTCCCAC ACTCCAAGAT TTTGAAGGTA GGAGCAGGGA ATGGTGTCCG TGGGAAGGCT GTGCCAAAGG GGAAAAGGGA TGTCACAACA ACCTGCTTAT
Consensus CCCAaGaaGA AGCTGCCAAG AAGTGAccct tgcccc.cca actcc.agat ttcaaaggag g.ag...... .......... tgcaaa.gct gtgcccaagg ggaggaagga ggtcacacca atatgatgat
781 880
MRPL11_CDS
MRPL11_mRN GGTTTTCATG ACTTTGAATG ATATATTTTT GTACATCTAG CTGTATCGAG GCATCAGGCC TGAATAAACA TCCTTTCTTA CCCAAAAAAA AAA
MRPL11P2 GGTTTTCGTG ACTTTGAATG ATATATTTTT GTACATCTAG CTGTATCGAG ACATCAGGCC TGAATAAACA TCTTTTCTAA AAAAAA
MRPL11P1 GGTTTTCATG ACTTTGAATG ATATATTTTT GTACATCTAG CTGTATCGAG GCATCAGGCC TGAATAAACA TCCTTTCTTA CCCACTGTCA TCTTCTATCT
MRPL11P3 TATGTTCCTG ACTTTTGAAA AATTATTATT ATAATT---- ---TTTAGAG ACAG-TGTCT TGCTCTGCCA CCCAAGTTGG AGCACAGTAG CA
Consensus ggttttc.tg actttgaatg atatattttt gtacatctag ctgtatcgag .catcaggcc tgaataaaca tcctttct.a ..cacagt.. ..........