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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 531 Check: 0 ..
Name: MRPL30_CDS Len: 531 Check: 132 Weight: 0.93
Name: MRPL30_mRNA Len: 531 Check: 132 Weight: 0.93
Name: MRPL30P1 Len: 531 Check: 4674 Weight: 1.05
Name: MRPL30P2 Len: 531 Check: 4549 Weight: 1.05
Name: MRPL30P3 Len: 531 Check: 4377 Weight: 1.05
Name: Consensus Len: 531 Check: 5808 Weight: 0.00
//
1 130
MRPL30_CDS ATGC TGAGATTACA GGCGCCCGC- -ACCACGCCC AGCCTCTAAA GAGAGCAATC ACTACACTTA TGGCTGGGAT TTTGCGCTTA GTAGTTCAAT
MRPL30_mRN ATGC TGAGATTACA GGCGCCCGC- -ACCACGCCC AGCCTCTAAA GAGAGCAATC ACTACACTTA TGGCTGGGAT TTTGCGCTTA GTAGTTCAAT
MRPL30P1 TTATC CTTAAAAACT CTGATCCCGC CCTTCGGTGG AAAAGTTCAG TCTGAACGTT TAGCGAGTGC TGCCTCTAAA GAGAGCAATC ACTACACTTA CGGCTGAGAC TTTGCGCTTA GTAGTTCAGA
MRPL30P2 AATGGAAGC AGTGAGTCCT CAGCTTCTGC T----GGTGG GAAGGTTCAT GCTGAATATT TAGCAGGCGC TCTCTCTAAA GAGAACAGCC ACCACACTTA TGGCAGGGAC TTTGCTGTCA GTAGCTCAAG
MRPL30P3 TAATGGAAGC AGTGAGTCCT CAGCTTCTGC T----GGTGG GAAGGTTCAT GCTGAATATT TAGCAGGCGC TCTCTCTAAA GAGAACAGCC ACCACACTTA TGGCAGGGAC TTTGCTGTCA GTAGCTCAAG
Consensus .......a.c ..t.a...ct c.g.t.c.gc .....ggTGg .aAggTTca. gctGaacgtt tAgCa.GcgC tgcCTCTAAA GAGAgCAatC ACtACACTTA tGGCtGgGAc TTTGCgcTtA GTAGtTCAa.
131 260
MRPL30_CDS GGCCCCCAGG CAGACTACAG ACCGTGACAA AAGGTGTGGA GTCTCTTATT TGTACAGATT GGATTCGTCA CAA-TTCACC AGATCAAGAA TTCCAGAAAA AGTGTTTCAG GCCTCACCTG AAGATCATGA
MRPL30_mRN GGCCCCCAGG CAGACTACAG ACCGTGACAA AAGGTGTGGA GTCTCTTATT TGTACAGATT GGATTCGTCA CAA-TTCACC AGATCAAGAA TTCCAGAAAA AGTGTTTCAG GCCTCACCTG AAGATCATGA
MRPL30P1 GGCCCCCAGG CAGACTACAG ACCGTGACAA AAGGTGTAGA GTCTCATTTG TACA--GATT GGATTCGTCA CAAATTCACC AGATCAAAAA TTCCAGATAA AGTGTTTCAC GCCTCACCTG AAGATCATGA
MRPL30P2 AGGCAAAATG AA--CTACAG ACTGGGACAA AAGGTGTGAA GTCTCTCGTT TACATAGATT GGATTCATCA CAAATTTACC AGGTCAAGAA TTCCATATAA AGCGTTTCAG CCTTCACTTG CAGATCATGA
MRPL30P3 AGGCAAAATG AA--CTACAG ACTGGGACAA AAGGTGTGAA GTCTCTCGTT TACATAGATT GGATTCATCA CAAATTTACC AGGTCAAGAA TTCCATATAA AGCGTTTCAG CCTTCACTTG CAGATCATGA
Consensus gGcCcccAgG cAgaCTACAG ACcGtGACAA AAGGTGTggA GTCTCtt.Tt TacA.aGATT GGATTCgTCA CAAaTTcACC AGaTCAAgAA TTCCAgAtAA AGtGTTTCAg gCcTCACcTG aAGATCATGA
261 390
MRPL30_CDS AAAATACGGT GGGGATCCAC AGAACCCTCA TAAACTGCAT ATTGTTACCA GAATAAAAA- GTACAAGAAG ACGTCCATAT TGGGAAAAAG ATATAATAAA GATGCTTGGA TTAGAAAAAG CACATACCCC
MRPL30_mRN AAAATACGGT GGGGATCCAC AGAACCCTCA TAAACTGCAT ATTGTTACCA GAATAAAAA- GTACAAGAAG ACGTCCATAT TGGGAAAAAG ATATAATAAA GATGCTTGGA TTAGAAAAAG CACATACCCC
MRPL30P1 AAAATATGGT GGGGATCCAC AGAACCCTCA TAAACTGCAT ATTGTTACCA GAATAAAAA- GTACAAAATA -CGTCCATAT TGGGAAAAAG ATATAATAAA GAAGCTTGGA TTGGAAAAAT CACATATCCC
MRPL30P2 AAAATATGAC GGAGATCCAC AGAATCCTCA GAAACTGCAT ATTGTTACCA GAATAAAAAA GTACAAAAAG GTGTCCATAT TGGGAAAAAG ACATAATAAA GATGCTCAGA TTAGAAAACA CACATATCCA
MRPL30P3 AAAATATGAC GGAGATCCAC AGAATCCTCA GAAACTGCAT ATTGTTACCA GAATAAAAAA GTACAAAAAG GTGTCCATAT TGGGAAAAAG ACATAATAAA GATGCTCAGA TTAGAAAACA CACATATCCA
Consensus AAAATAtGgt GGgGATCCAC AGAAcCCTCA tAAACTGCAT ATTGTTACCA GAATAAAAA. GTACAAaAag .cGTCCATAT TGGGAAAAAG AtATAATAAA GAtGCTtgGA TTaGAAAAa. CACATAtCCc
391 520
MRPL30_CDS TCAAGTTCAC AAGAATATCC CTTCAGTGAA TGCAAAATTG AAAGTAGTTA AGCATTTGAT AAGGTT---- ----TGTTGT TTCTTCTCAG CT---CTTTT TAAAATGTAT TGCCTAG
MRPL30_mRN TCAAGTTCAC AAGAATATCC CTTCAGTGAA TGCAAAATTG AAAGTAGTTA AGCATTTGAT AAGGTT---- ----TGTTGT TTCTTCTCAG CT---CTTTT TAAAATGTAT TGCCTAG
MRPL30P1 TCAAGTTCAC CAGAAT-TCC CTTCAGTGAA TGCAAAATTG AAAGTGGTTA AGCATTTGAT AAGAAT---- ----TGAAGT TGCCACAAGG ACTTCCAACA GAGGAGAACA TGTCTAACAC ATGCCTCAAA
MRPL30P2 TCAAGTTCAC AAGCATATTG CTTCAGTGAA TGCAAAACTG AAAGTGGTTT AACAGTCAGT AAGAATCAAG CCCCTGAAGT TGCCACAAGG ATTTCCAACT GAGGAGGACA TGTCTAAGCT CTGCCTCAAG
MRPL30P3 TCAAGTTCAC AAGCATATTG CTTCAGTGAA TGCAAAACTG AAAGTGGTTT AACAGTCAGT AAGAATCAAG CCCCTGAAGT TGCCACAAGG ATTTCCAACT GAGGAGGACA TGTCTAAGCT CTGCCTCAAG
Consensus TCAAGTTCAC aAGaATaTcc CTTCAGTGAA TGCAAAAtTG AAAGTgGTTa AgCAtTtgaT AAGaaT.... ....TGaaGT TgCcaCaagG atttcCaact gAggAggaca TGtCTAa... .tgcctcaa.
521 531
MRPL30_CDS
MRPL30_mRN
MRPL30P1 AGCACTGGGG A
MRPL30P2 AGC
MRPL30P3 AG
Consensus ag........ .