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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 820 Check: 0 ..
Name: MRPL35_CDS Len: 820 Check: 8352 Weight: 2.04
Name: MRPL35_mRNA Len: 820 Check: 4887 Weight: 0.85
Name: MRPL35P1 Len: 820 Check: 9084 Weight: 0.77
Name: MRPL35P3 Len: 820 Check: 9934 Weight: 0.77
Name: MRPL35P4 Len: 820 Check: 7273 Weight: 0.77
Name: MRPL35P2 Len: 820 Check: 4752 Weight: 0.80
Name: Consensus Len: 820 Check: 6543 Weight: 0.00
//
1 130
MRPL35_CDS ATGGCTG CCTCTGCCTT TGCTGGTGCA GTGAGAGCAG CTTCAGGAAT CCTACGGCCC CTGAATATTT TGGCATCTTC
MRPL35_mRN GCCGTA GGCGAAGGTG AAGATGGCTG CCTCTGCCTT TGCTGGTGCA GTGAGAGCAG CTTCAGGAAT CCTACGGCCC CTGAATATTT TGGCATCTTC
MRPL35P1 TAAGATTTT CACAAACCTT TTATAACCCT TTAAATTTTT TGTTGATGGC AAGATGGCTG CCACTGCCTT TGCCAGTGCA GTGAGAGCAG CTTCAGGAAT CTTATAGCCC CTGAATATTT TGGCATCTTC
MRPL35P3 CAGAGCACG CAGAAAACTC TTTAATAAGA GCTCAAATTT GGAGGATAAC GAGATAGCTG CCTCTGCCTT TGCCGGTGCA GTGAGAGCAG CTTCAGGAAT CTTATGGCCT CTGAATATTT TGGCATCTTC
MRPL35P4 AAAAAAAAAA AAAAAAAAAA GAAAGAAACT TGGCATCATA GCAGGCTGGC AAGATGGCTG CCTCTGCCTT TGCTGGTGCG ATGAGAGCAG CTTCAGGAAT CT-ATGGCTC CTGAATATTT TTGCATCTCC
MRPL35P2 AGAAGGGATG GGGTTTGGGA TACATCCATA TCCATAAATT AGAGCTGAGA GGGATGGCTG CTTTTGCCTT TGCTGGTGCA GTGAGAGCAG CTTCAGGAAT CCGATGGCTC TTGAATATTT TGGCATCTTC
Consensus ..a....... .......... .......... ........t. .g.g...... .agATgGCTG CctcTGCCTT TGCtgGTGCa gTGAGAGCAG CTTCAGGAAT CctAtgGCcc cTGAATATTT TgGCATCTtC
131 260
MRPL35_CDS AACCTACCGC AACTGTGT-- CAAGAATGCC TCTCTTATTT CTGCATTGTC CACTGGACGT TTTAGTCATA TTCAGACACC AGTTGTTTCC TCCACTCCCA GACTTA-CCA CATCTGAGAG AAACCTGACA
MRPL35_mRN AACCTACCGC AACTGTGT-- CAAGAATGCC TCTCTTATTT CTGCATTGTC CACTGGACGT TTTAGTCATA TTCAGACACC AGTTGTTTCC TCCACTCCCA GACTTA-CCA CATCTGAGAG AAACCTGACA
MRPL35P1 AGCCTACCAA AACTGTGTGT CAAGAATGCC TCTCTTATTT CTGCATTGTC CACTGGACGT TTTAGTCATA TTCAGACACC AGTTGTTTCC TCTGCTCCCA GACTTA-CCA CATCTGTCAG AAACCTGACA
MRPL35P3 AGCCTACCAA AACTGTGT-- CAAAAATGCC TCTCTTATTT CTGCATTGTC CACTGGACGT TTTAGTCATA TTCAGACACC AGTTGTTTCC TCCACTCCCA GACTTA-CCA CATCTGAGAG AAACCTGACA
MRPL35P4 AGCCCACCGA AACTGTGC-- CAGGAATGCC TCTCTTATTT CTGCATTGTC TACTGGACGT TTTAGTCATA TTCAGACACC ATTTGTTTCC TCCACTCCCA GGCTGA-TCA CATCTGTCAG AAACCTGACA
MRPL35P2 AGCATACAGA AACTGTGT-- CAAGAATGCC TCTCTTATTT CTGCATTGTC CACTGGACGT TTCAGTCATA TTTAGACACC AGTTGTTTCC TCCACTTCCA GACTTAACCA CATCTGAGAG AAACCTGACA
Consensus AgCctACcga AACTGTGt.. CAagAATGCC TCTCTTATTT CTGCATTGTC cACTGGACGT TTtAGTCATA TTcAGACACC AgTTGTTTCC TCcaCTcCCA GaCTtA.cCA CATCTGagAG AAACCTGACA
261 390
MRPL35_CDS TGTGGGCATA CCTCAGTGAT CCTTAATAGA ATGGCCCCCG TGCTTCCAAG TGTCCTGAAG CTGCCAGTCA GATCTCTAAC ATACTTCAGT GCAAGAAAAG GCAAGAGAAA GACCGTGAAA GCTGTCATCG
MRPL35_mRN TGTGGGCATA CCTCAGTGAT CCTTAATAGA ATGGCCCCCG TGCTTCCAAG TGTCCTGAAG CTGCCAGTCA GATCTCTAAC ATACTTCAGT GCAAGAAAAG GCAAGAGAAA GACCGTGAAA GCTGTCATCG
MRPL35P1 TGTGGGCATC CTGCGGTAAT CTTTAATAGA GTGGCCCCCT TGCTTCCAAG TGTCCTGAAG CTGCCAGTCA GATCTCTAAC ATTCATTTGT ACACAAAAAG GCAAGAGAAA GACTGTGAAA GCTGTCATCT
MRPL35P3 TGTGGGCATA CTTCAGCGAT CCTTAATAGA GTGGCCCTCT TGCTTCCAAG TGTCTTGAAG CTGCCAGCCA GATCTCTAAC ATACGTCAGT ACAGGAAAAG GCAAGAGAAG GATTGTGAAA GCTGTCATCT
MRPL35P4 TGTGGGCATA CTGCAGTGAT CCCCAACAGA GTGGCCCCCT TGCTTCCAAG TGTCCTGAAG CTGCCAGTCA GAACTGTAAT ATACGTCAGT ACACAAAAAG GCAAGAGAAC AACTGTGAAA GCTGTTATCT
MRPL35P2 TGTGGGCATA CTTCAGCGAT CCTTAATAGA GTGTCCCCCT TGCTTCCGAG TGTCCTGAAG CTGCCAGTCA GATCTCTAAC ATACTTCAGT ACATGAAAAG ACAAGAGAAA GACTGTGAAA GCTGTCATCT
Consensus TGTGGGCATa CttCaGtgAT CcttAAtAGA gTGgCCCcCt TGCTTCCaAG TGTCcTGAAG CTGCCAGtCA GAtCTcTAAc ATaCtTcaGT aCA.gAAAAG gCAAGAGAAa gActGTGAAA GCTGTcATCt
391 520
MRPL35_CDS ATAGGTTTCT TCGACTTCAT TGTGGCCTT- GGGTGA
MRPL35_mRN ATAGGTTTCT TCGACTTCAT TGTGGCCTT- GGGTGAGGAG AAAGGCTGGC TATAAGAAAA AA-TTATGGA AAAAGACACC TGCAAGGAAG AAGCGATTGA GGGAATTTGT ATTCTGCAAT AAAACCCAGA
MRPL35P1 ATAGGTTTCT TTGACTTCAT TCTGGCCTTT GGTTGACGAG AAAGGCTGGT TATAAGAAAA AA-TTACGGA AAAAGACACT TGCAAGAAAA AAGCAATTGA GGGAATCTGT GTTCTGCAGT AAAACCCAGA
MRPL35P3 ATAGGTTTCT TCGACTTCAT TGTGGCCTTT GGATGA---G AAGGGCTGGT TATAAGAAAA AA-TTATGGA AAAAGGCACC TGCAAGAAAA AAGCGATTGA GGGAATTTGT ATTCGGCAAT AAAACCCAGA
MRPL35P4 ATAGGTTTTT TCGACTTCAT TCTGGCCTTT GGGTGAGGAG AAAGGCTGGT TATAAGAAAA AA-TTCTGGA AAAAGACACC TGCAAGAAAA AAGCAATTGA GGGAATTTGT GTTCTGCAAT AAAACCCAGA
MRPL35P2 ACAGGTTTCT TCGACTTCAT TGTGGCCTTT GGGTGAGGTG AAAGGCTGGT TAAAAGAAAA AAATTATGGA AAAAGGAACC TGCAAGAAAA AAGCGATTGA GGGAATTTGT ATTCTGCAAT AAAACCCAGA
Consensus AtAGGTTTcT TcGACTTCAT TgTGGCCTTt GGgTGA.g.g aaaggctggt tataagaaaa aa.ttatgga aaaag.cacc tgcaagaaaa aagc.attga gggaatttgt .ttctgcaat aaaacccaga
521 650
MRPL35_CDS
MRPL35_mRN GTAAACTCTT A-GATAAAAT GACGACGTCC TTCTGGAAGA GGCGAAA--C TGGTACGTTG ATGATCCTTA TCAGAAGT-A TCATGATCGA ACAAACCTGA AAGTATAGAT CAGAAGTTTC ACTTGTTTCT
MRPL35P1 GTGAACTCTT A-GATAAAAT GATGATGTCC TTCTGGAAGA GGTGAAAAAC TGATATGACG ATGATTCTTA TCAGAAGTTA TCATGATCGA ACAAACCTGA AAGTATAGAT CAGAAGTTTT ACTTGTTTCT
MRPL35P3 GTAAACTCTT AAGATAAAAT GACGACGTCC TTCTGGAAGA GGTGAAA--C TGGTATGTCC ATGATCCTTA TCAGAAGT-G TCATGATCGA ACAAACCTGA AAGTATAGAT CAGAAGTTTC ACTTGTTTCT
MRPL35P4 GTAAACTCTT A-GATAAAAT GACAGTGTCC TTCTGGAAGA GGTGAAA--C TTGTATGCTG ATAATCCTTA TCAGAAAT-A TCTTTATGAA ACAAACCTGA AAGTATAGAT CAGAAGTTTC ACTTGTTTCT
MRPL35P2 GTAAACTCTT AAGATAAAAT GGCGACGTCA TTCTGGGAGA GGTAAAA--C TGGTATGTCC ATGATCCTTA TCAGAAGT-A TCATGATTGA ACAAACCTGA AAGTATAGAT CAGAAGTTTC ACTTGTTTCT
Consensus gtaaactctt a.gataaaat gacga.gtcc ttctggaaga ggtgaaa..c tggtatg... atgatcctta tcagaagt.a tcatgat.ga acaaacctga aagtatagat cagaagtttc acttgtttct
651 780
MRPL35_CDS
MRPL35_mRN CAGTTATTGG ATATGTATCT TTGTGTAC-- -ATATCTTTG CAAAAATGGA TAAGTACAAA ACTTGATGTA AATTGTACCA ATGAATATGT AAACATACAG TGACAACATT AAACTTAGAA AAGTTTTAAA
MRPL35P1 CAGTTATTGA ATATGTATCT TTGTGTAC-- GATATCTTCA CAAAAATGGG TAAGTATAAA ACTTGATGTA AATTGTACCA ACGAATAGGT AAACATACAG TGCCAACGTT AAACTTATAA AAGTTTTAAA
MRPL35P3 CAGTTATTGA ATATGTATCT TTGTGTAC-- -ATATCT--G CAAAAATGGA TAAGTAAAAA TCTCGATGTA AATTGTATCA ATGAATATGT AAACATACAG TGACAACACT GAACTTATAA AAGTTTTAAA
MRPL35P4 CAGTTATTGA ATATGTATCT TTGTGTACAT GACATCTTTG CAAAAATAGG TAAGTATAAA AC-CGATGTA AATTGTACCA GTTAATATGT AAACATCCAA TGCCAACATT AAACTTATAA AAGTATTTAA
MRPL35P2 CAGTTATTGA ATATGTATCT TTGTGTACAT GCTATCTTTG CAAAAATGGA GAAGA----- ---TGATGTA AATTGTACCA ATGAATATGT AAACATACAG TGACAATATT AAACTTATAA AAGTTTTAAA
Consensus cagttattga atatgtatct ttgtgtac.. .atatctt.g caaaaatgg. taagta.aaa .c..gatgta aattgtacca atgaatatgt aaacatacag tg.caacatt aaacttataa aagttttaaa
781 820
MRPL35_CDS
MRPL35_mRN ACTTAAAAAA
MRPL35P1 ACTTAAAAAA AAT------- TTTGCTGAAG AGTAGATCA
MRPL35P3 ACTTAAAAAA AAAGCTCAAA TTTGTAAAAG ACATGTAAAA
MRPL35P4 ACTTAAAAAA AAAAA--AAC TTGGCATCAT ACATA
MRPL35P2 AAAAATTAGA CCTAAGAGGA AGGGCTGATC CACTGGAT
Consensus acttaaaaaa .......... ...g...... ..........