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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 636 Check: 0 ..
Name: MRPL36_CDS Len: 636 Check: 6314 Weight: 1.49
Name: MRPL36_mRNA Len: 636 Check: 3041 Weight: 0.75
Name: MRPL36P1 Len: 636 Check: 4230 Weight: 0.75
Name: Consensus Len: 636 Check: 3301 Weight: 0.00
//
1 130
MRPL36_CDS ATGGCAA ATCTTTTTAT AAGGAAAATG GTGAACCCTC TGCTCTATCT CAGTCGTCAC ACGGTGAAGC
MRPL36_mRN TGAGAG CGTGCGGCCG GATTCACCAC AACATGGCAA ATCTTTTTAT AAGGAAAATG GTGAACCCTC TGCTCTATCT CAGTCGTCAC ACGGTGAAGC
MRPL36P1 CTGGCAGGGG CCGACGCAGG GACCGGCGCG GGGGTGAGAG CGCGCGGCCG GATTCACCAC AACATGGCAA CTCTTTTTAT AAGGAAAATG GTGAACCCTA TGCTATATCT CAGTCGTCAC ACAGTGAAGC
Consensus .......... .......... .......... ....tgagag cg.gcggccg gattcaccac aacATGGCAA aTCTTTTTAT AAGGAAAATG GTGAACCCTc TGCTcTATCT CAGTCGTCAC ACgGTGAAGC
131 260
MRPL36_CDS CTCGAGCCCT CTCCACATTT CTATTTGGAT CCATTCGAGG TGCAGCCCCC GTGGCTGTGG AACCCGGGGC AGCAGTGCGC TCACTTCTCT CACCCGGCCT CCTGCCCCAT CTGCTGCCTG CGCTGGGGTT
MRPL36_mRN CTCGAGCCCT CTCCACATTT CTATTTGGAT CCATTCGAGG TGCAGCCCCC GTGGCTGTGG AACCCGGGGC AGCAGTGCGC TCACTTCTCT CACCCGGCCT CCTGCCCCAT CTGCTGCCTG CGCTGGGGTT
MRPL36P1 CTCGAGCCCT CTCCACATTT CTATTTGGAT CCCTTCGAGG TGCAGCCCCC GTGGCTGTGG AACCCGGGGC AGAAGTGCGC TCACTTCTCT CACCCGGCCT CCTGCCCCAC CTGCTGCCCG CGCTGGGGTT
Consensus CTCGAGCCCT CTCCACATTT CTATTTGGAT CCaTTCGAGG TGCAGCCCCC GTGGCTGTGG AACCCGGGGC AGcAGTGCGC TCACTTCTCT CACCCGGCCT CCTGCCCCAt CTGCTGCCtG CGCTGGGGTT
261 390
MRPL36_CDS CAAAAACAAG ACTGTCCTTA AGAAGCGCTG CAAGGACTGT TACCTGGTGA AGAGGCGGGG TCGGTGGTAC GTCTACTGTA AAACCCATCC GAGGCACAAG CAGAGACAGA TGTAG
MRPL36_mRN CAAAAACAAG ACTGTCCTTA AGAAGCGCTG CAAGGACTGT TACCTGGTGA AGAGGCGGGG TCGGTGGTAC GTCTACTGTA AAACCCATCC GAGGCACAAG CAGAGACAGA TGTAGACCCT TTCCCTCCAG
MRPL36P1 CAAAAACAAG ACTGTCCTTA AGAAGCGCTG CAAGGACTGT TACCTGGTGA AGAGGCGGGG TCAGTGGTAC GTCTACTGTA AAACCCATCC GAGGCACAAG CAGAGACAGA TGTAGACCCT TTCCCTCCAG
Consensus CAAAAACAAG ACTGTCCTTA AGAAGCGCTG CAAGGACTGT TACCTGGTGA AGAGGCGGGG TCgGTGGTAC GTCTACTGTA AAACCCATCC GAGGCACAAG CAGAGACAGA TGTAGaccct ttccctccag
391 520
MRPL36_CDS
MRPL36_mRN AGTCACGCAC ATACTCGTCA TCGCATCACT TGGGAGAATG GTTGTATCTT ATGGAAGGAA TTATCACATC AAGGAGTCAG GGGAAAGTGA CTGGAAGCAA ACGCCCTAAA AGTTACCCAT CACGTTTCAG
MRPL36P1 AGTCACGCAC ATACTCGTCA TCGCGTCTCT TGGGAGAATG GTTGTATCTT ATGGAAGGAA TTATCACATC AAGGAGTCAG GGGAAAGTGA CTGGAAGCAA ACGCCCTAAA AGTTACCCAT CACGTTTCAG
Consensus agtcacgcac atactcgtca tcgc.tc.ct tgggagaatg gttgtatctt atggaaggaa ttatcacatc aaggagtcag gggaaagtga ctggaagcaa acgccctaaa agttacccat cacgtttcag
521 636
MRPL36_CDS
MRPL36_mRN TGTAAATGAG TAACTATAGA AGACATTGCG TTATCTTATT TCCAAAACGT TCCAACTAAA AAACATTTTC CTATTAAAA- ---------- ---TAGACCT TCCG
MRPL36P1 TGTAAATGAG TAACTATAGA AGACATTGCA TTATCTTATT TCCAAAATGT TCCAATTAAA AAACATTTTC CTATTAAAAA AAAGAAAATA GTTTTGACCT CTCAGACCCC TGAAAG
Consensus tgtaaatgag taactataga agacattgc. ttatcttatt tccaaaa.gt tccaa.taaa aaacattttc ctattaaaa. .......... ...t.gacct ..c....... ......