Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1293 Check: 0 ..
Name: MRPL42_CDS Len: 1293 Check: 895 Weight: 2.77
Name: MRPL42_mRNA Len: 1293 Check: 6383 Weight: 0.36
Name: MRPL42P2 Len: 1293 Check: 1574 Weight: 0.36
Name: MRPL42P5 Len: 1293 Check: 8562 Weight: 0.71
Name: MRPL42P1 Len: 1293 Check: 7515 Weight: 0.77
Name: MRPL42P3 Len: 1293 Check: 9341 Weight: 0.96
Name: MRPL42P4 Len: 1293 Check: 7976 Weight: 1.07
Name: Consensus Len: 1293 Check: 2818 Weight: 0.00
//
1 130
MRPL42_CDS
MRPL42_mRN AGC CGGATTGAAA CAAGATGGCG GGTTCGTGGT GAGAAGCCGT CAAG---GAG TAGAAATTGG TATGCTTAGA AGCAGATTCT
MRPL42P2 GCACCGC ACAAATGCAA GATGTTAATA TTGGGGGCAA CAAGTGGGGG GACTTGAGGT AAGGAGCTGC CAAG---TGA TGAAAACTGG TGTGCCTAGA GGCAGATTTT
MRPL42P5 AATTTGTCCA TGATTACAAC TGGGTAAAAA TAATTTAAGA TCTATGCAAA AATAAGGAGA CAAGATGATG GGCTCATGGT GAACAGCTGT GAAGCAGGGA TGAAAATTAA TGTGCCCAGA AGCAGATT--
MRPL42P1 TCTCTTGCC TGATTG-ACC TGG---CCAG AACTTCCAAT ACTATGTTGA ATTGGAATGG AGAGA-GAGG GCATCCTTGT CTTGTGCTG- --------GT TTTCAAACGA AATA--TAGA AGCAGATTTT
MRPL42P3 TGCTGTA TCTTTTCTCA TAACTTCACT TGTGTCTTTA TATTTAATGA GTATCTTTTC TGTAAGCAGT ATATAGTTGC ATTTTTCTTT TTTGTACAGT CTGACCATCT TTGCCTTTTA GTTGGAGTGA
MRPL42P4 ATGAAACA GCGGT---AA TAAAAATATG TACTTGATGG GGTTTTGTGA AGATTTAGGG GTGATATACA TCAGCACATA GAACATTATC TGACACACAT TAACTTCTGT GTAAGTGTCA
Consensus .......... ...t...... .......... .......... ....t..... .......... .......... ......t... ......c... .......... .......... .......... ....g..t..
131 260
MRPL42_CDS ATGGCTGTAG CTGCAGT--A AAATGGGTGA TGTCAAAGAG AACTATCTTG AAACATT---
MRPL42_mRN AAAAGCAGTT TCTCTTCAGA ACATCTTTTT ---------T CATACCACTT GATAAGCATC TTGAAACACC ATGGCTGTAG CTGCAGT--A AAATGGGTGA TGTCAAAGAG AACTATCTTG AAACATT---
MRPL42P2 CAAAGCATTC TCTCTTCAAA ACATCTTTTT CGAAGATGTT TATACTACCT GATAAGCATC TCCATACCCC ATGGCTGTAG CAGCAGT--A AAATAGAGGA CAGTAAAGCA AATTGTCTTG AAACATT---
MRPL42P5 ---------- -CTCTTTGAA GCATCTTTTT ---------T CATACTACCT GATAAGTGTC TTG---CTAC ATGGCAGTAG CAGCAGT--A AGACGGGTGA TATCAAAGAG AACTATCTGG AAACATT---
MRPL42P1 AAAAGCAGTT TCTCTTCAGA ACATTTTTTT --------TT CATACCACTT GGTAAGCATC TTGAAACACC ATGGCTGTAG CAGCAGC--A AAATGGGTGC TATCAAAAAG AACTATCTTG AATAGTTCCA
MRPL42P3 TTAGACTACT TATATTTAAT GTGATTATTT ---------- -ATTTGTCAG GCTGAA-ATC T---AACATC TTGCCATTTG ---------T TTTCTGTTTG TTTCATC-TG TTCTTTGTTC CCCTTTTCCT
MRPL42P4 GTGATCAGCA GCAGTAAAAC AAGTGATAGC --------AA ACTATCTTGA AACGTGTATT TCCAAACCAA AAGGAGATTG CAATAGTGGA AAAGGGGAGA AAACTTGGAT GCCAATCAAA AGGGATAGAT
Consensus .....c.... ....t..a.. .......... .. ..t....... .......at. t....ac... atGgctgTaG c.gcagt..a aaatgGgtga t.tCaaagag aaCtaTcttg aaacaTt...
261 390
MRPL42_CDS -TATTTCCAG TCCAAAATGG AGCTTTATAT TGTGTTTGTC ATAAATCTAC GTATTCTCCT CTACCAGATG ACTATAATTG CAACGTAGAG CTTGCTCTGA CTTCTGATGG CAGGACAATA GTATGCTACC
MRPL42_mRN -TATTTCCAG TCCAAAATGG AGCTTTATAT TGTGTTTGTC ATAAATCTAC GTATTCTCCT CTACCAGATG ACTATAATTG CAACGTAGAG CTTGCTCTGA CTTCTGATGG CAGGACAATA GTATGCTACC
MRPL42P2 -TATTTCCAA TGCAAAATGG AGCTTTATAC TGTGTGTGTT ATAAATCTAT GTATTCTTCT CTACCTGATG ACTATAATTG CAAAACAGAG CTTGCTGTGA CTTCCAATGG CAGGAAGTGA GCCTGCTACC
MRPL42P5 -TATCTTCAA TCCAAAATGG AGCCTTAT-- ---GTTTGTC ATAAATCTAC GTACTCTTCT TTTCCAGGTG ACTACAATTG CAAAGTAGAA TTTGCTTTGA CACCTGATGC CAGGACAATA GTATGTTACC
MRPL42P1 ATATTACCAA TCCAAAACAG AGTTTTATAT T--GTTTGTC ATAAATCTCC ATATTCTTCT CTACCAGATG ACTGTAATTG CAAAGAAGAG CTTGCTGTGA TATCTGATGG CAGAACAATA GTGTGCTACC
MRPL42P3 CTTTTTC--- TGCTTTTTTT GGATCAATTG AGTATTTGA- ATAATTCCGT GTATTCTTCT CTTTCAGATG ACTGTAAATG CAAAGTACAG CTTGCTTTGA TATCTGACGG CAGGATGACA TTATGCTACC
MRPL42P4 AAATT----- ---ATGATGG AGCTCTGTAT T--GTTTTTT ATAAATCTAT GTATTCTTCA CTGTTAG--G CCA------- CAAAGTAGAG CTTTTCTTGA CATCTGATGG CAGCACAATA GTAAGCTGCA
Consensus .taTttcca. tccaaaatgg aGctttaTat tgtgTTTgtc ATAAaTCtac gTAtTCTtCt cTaccAGatG aCtataattg CAAaGtAgAg cTTgct.TGA catCTGAtGg CAGgAcaAtA gTatGcTaCc
391 520
MRPL42_CDS ACCCTTCTGT GGACATTCCA TATGAACACA CAAAACCTAT CCCTC-GGCC AGATCCTGTG CATAATAATG AAGAAACACA TGATCAAGTG CTGAAAACCA GATTGG-AAG AAAAAGTTGA ACACCTTGAG
MRPL42_mRN ACCCTTCTGT GGACATTCCA TATGAACACA CAAAACCTAT CCCTC-GGCC AGATCCTGTG CATAATAATG AAGAAACACA TGATCAAGTG CTGAAAACCA GATTGG-AAG AAAAAGTTGA ACACCTTGAG
MRPL42P2 ACTCTCCTGT GGACATTCCC TATGAATACA CAAAACCCAT CCTTC-AACC ACATCCTGGG CACAATAATG AAGAAATACA AGATCAAGTG CTGAAAACCA GATTGG-AAG AAAAAGGTGA ACACCTTGAG
MRPL42P5 ATCCTTCTAT AGACATTCCA TATGAACGCA CAAAACCTAT CCCTT-GACC AGATCCTGTG TATAATAATG AAGAAACACA TGGTCAAGTG CTGAAAACTA GA---G-AAG AAAAAAGTGA ACACCTTGAG
MRPL42P1 ACCATTCTGT GGACATTTCA TATGAGCATA CAAAACAAA- CCCTC-AATC AGATTCTGTG CATGATAATG AAGAAACATA TGTTCAAGTG CTGAAAACTA GATTGG-AAG ATAAAGGTAA GCATCTTGAG
MRPL42P3 ACCGTTCTGT GGACATTCCA TATGAACACA CCAAACCTAT CCCTCTAAAC AGATCCTGTG CATAATAACT AAGAAACACA TGACCAGGTG CTCAGAGCCA GATTAG-AAG AATA---TGA GCACCTTGAG
MRPL42P4 CCGCTTCTGT GGACATTGCA GATGAACACA TAAAACCTCT CCCTC-AACC AGATCCTGTA CGTGACAATG AAGAAACACA TGCTCAAGTG CTGAAAAATA GATTAGCAAA AAAAAGGTCA GTACCTTAAG
Consensus acccTTCTgT gGACATTcCA tATGAaCacA caAAACctat CCCTc.gacC AGATcCTGTg caTaAtAAtg AAGAAACAcA TGatCAaGTG CTgAaAaccA GAttgG.AAg AaaAag.TgA acAcCTTgAG
521 650
MRPL42_CDS GAAGGACCTA TGATAGAACA ACTTAGCAAA ATGTTCTTTA CTACTAAGCA CCGTTGGTAT CCT---CATG GACGGTATCA CAGATGTCGT AAGAATCTGA ATCCTCCAAA AGACAGATGA
MRPL42_mRN GAAGGACCTA TGATAGAACA ACTTAGCAAA ATGTTCTTTA CTACTAAGCA CCGTTGGTAT CCT---CATG GACGGTATCA CAGATGTCGT AAGAATCTGA ATCCTCCAAA AGACAGATGA TGCGGAGGTT
MRPL42P2 CAAAGACCCA TGATAGAACA ACTTAGCAAA ATGTTCTTTA GTATTACACG CTGTTGGTAT TCT---CATG GACAGTATTA AAGATGTTGC AAGAAACTAG ATCTTCTAAA AGGCAGATGA --CTGAGGTA
MRPL42P5 CGAGAACCCA TAATAGAACA ACTTAGCAAA ATGTTCTTTA -TGCTAAGTA CGGTTGGCAT CTT---CGTG GACATTAGCA CAGATGTCAG AAGAAACCGG AACCTCCAGA AGACAGATGA TATTGAGGTT
MRPL42P1 ---AAACCCA TGATAGAACA ACTCGGCAAA ATGTTCTTTC CTACTAAACA CCACTGGTAT CCT---CATG GACAGTATCA C-GATGTCTT AAGAAACTAG ACCCTCCAAA CGACAGATTT TTAAATTGCC
MRPL42P3 CAAGGACCCA -GATAGACCA GCTTAGCAAA ATGTTTGTTA CCACTAAGCA CTGTTGATAT CCT---CATG GACAGTATCA CAG-TGTCAT AAAAAACTGA ACCCTCCAAA AGACAGATGA TTTCGAGGTT
MRPL42P4 CAAGGACC-A CGATAGAACA ACTTAGCAAA ATGTTCTTCA TCACTCAGTA CTGGTATCGT TGTGGGCAGT ATCAGTCTCA CAGTCATGGT AAGAATGTAG ATGGTCTGAA AGACAAACAA TATTGAAGAT
Consensus .aaggACC.A tgATAGAaCA aCTtaGCAAA ATGTTctTta ctaCTaAgcA CcgtTggtaT ccT...Catg gaCagTatCA CaGatgTcgt AAgAAtctga AtccTCcaaA aGACAgAtga t......g..
651 780
MRPL42_CDS
MRPL42_mRN CCTGGGGGAA TCAAAGAGAA ATGT------ --GCCTCATT TGCCATTTGA GAAAATGCAG TCTGGTGTAT TCAGTAA--- --TATATAGT AAAGTAATAA TGATAAAATA TCTTTTCATA T------ATT
MRPL42P2 CTCGGGGGAA TCAAAGAGAA ATGT------ --TCTTCATT TGCCATTTGA GAAAATGCAA TCCGGGGTGT TCACTAACAT GTTATATAGT AAAGTCAGAA TAATGAA-TG TCTTTTCATA TTAAAAAAAT
MRPL42P5 CTTGGGG-AA TTAAAGAGAA ATATTACCCT CTGCCTCATT TGCCATTGGA GACAGTGCAA TCTGGTGTAT GCACTAA--- ---------- ----TAATAA TAATAACATG TCTTTTCATA TTTAA--AAA
MRPL42P1 TTTGAGGATC AATTCATGAG ATCTACCCAG AAAATAAATG TTACAGTGTT TCTATTGGCT TCTAGGAAAT AATTAAA--- ---------- TTAGTTATAT T-TTAATCAG TTTCTTCTAT CTGTTAGGCC
MRPL42P3 CCTGGG--AA TCAAAGAGAA ACGTTATCCT TTGCTTCATT AGCCATTTGT GAAAATGCAA TCTGTTATAT TCACTAATGG ATATATCATA AAAATAATAA TTATAAAATC TCTTTTCATA TTAAAA-AAT
MRPL42P4 CTCAGG--AA TCAAAGAGAA ATGTTATCGT GTAATTTATG GGCCATTTGA GAAAATGCAA TCTGGTGTAT TCACTAATAT ATTATAC--- ACTGAAATAA TAATAAAATG TATTTTCATA T--------A
Consensus .....g.... .......ga. a..t...c.. .......at. ...ca.t... ...a.tg... tct.....at .....aa... .......... ......ata. t..taa.... t.t.ttc... ..........
781 910
MRPL42_CDS
MRPL42_mRN AGAATGTGTA CTTTTATATA AAGTAATTCT GGATTTGACA TTCTCATTTA GAGAAACCTA TTTTCTTTTT TCTTTTTCTA T-TTTAGTGT TTCATTTATG TGCGGTCTCC AATTTAGGAC T-TTTCCATA
MRPL42P2 AGTAGGGGGA AGTAGGTGTG GGACATATGA GGACTGTCTG CACTATCATA ATTTTTCTGT AAATCCAAAA CAACTGTAAG A-TTAAAAGT TTATTTTTAA AATTAAAGAA CCTTAAAAAA T-AATACA-G
MRPL42P5 AAAAACACAA AATCTTTAGG AAGCCGAGGT GGGTGGATCG CTTGAGTCAG GAGTTTGAGA GCAGCCTGAG CAACATAGAC C-CCATCTCT AAAAAAAATT AGCCAAGTGT GGTGATGTG- --TGTCTGTG
MRPL42P1 CCTTTCATCC GTTCTATTTT TTTTTTTTTT TGGTGAGACG GTATCTTGCT CTGTCTCCCA GGCTGGAGTG CAGTGGTGTG CGATCTCGGT TCACTGCAAC CTCCACTTCC CAGGCTCAGG TGATTCTCCT
MRPL42P3 ATTAAGATAC AGAAGTTTTC TTATCATTTT CTGTAGTTTT ATTTCTTCCT TACCCTGCAT ATTAATCTAT TCTCACACTG C--TATAAAT ACCCAAGACT GCGTAATTTA TGAAGTAAAG AGGTTTAATT
MRPL42P4 TTTTAAAAAA AGAAGATGCA AATTCCA--- -GATGCAAAA TTCTAGTAAG CAGCAGAGCT GAGATTTGAA ACCCATTTGG -----GCGCT TCTAAAGGGC TTATTCTCTG TATTATGGAG CACACATTTT
Consensus ......a... ......t... .......... ...t...... .t.t..t... .......... .......... .......... .........t .......... .......... .....t.... ..........
911 1040
MRPL42_CDS
MRPL42_mRN GTGCCAAAGC CAT--ACATA TTCAGTAGAA CATCAATAAA TTCATCAGAA ATTCAAAC-- ACTTTATTAT AAAACGGGCT TCGTGTTAGA TAATTTTGCT AAACAGTAGG CTACTGTAAG TGTTCTGAGC
MRPL42P2 GTACATCTTT TCT--CCAGA TGCCAAGAGA AGTAGAATTA TATTCTTGAA TTCCCCAT-- CCGTTTTTTT CAAACTACCC ACTAGT---G CCAGCTCAAG GAGCAGTTTG CTTTTTTCAT TTAGAAGTAT
MRPL42P5 GTGCCAGCTA CTTGGAAGGC TGAGGTAGGA GGATTGCTTG AGCTCAGGAG GTTGAGGCTG CAGAGAGTGG TGATCATGCC TCTGCAT--T CCAGCCTTGG TGACAGA--G CAAGACCCTG TCTCAAACAA
MRPL42P1 GTCTCAATCT CCTGAGAACC TGGGACTGCA GGTGCACCAC TACTATCTTA TATATGAT-- -CCTTAATAG CATTGTTTCC CCTGCGATTT CTATTTAGGA GGTGAGGAAT CTTTTAAGAA GGTGGAAAGG
MRPL42P3 GACTCACAGT TCACTATGGC TGGGGAGGCC ATATCAATTT TAAACTTACA ATCAAGGC-- ----AAAAGG AGAAGCAGAC ACATTCTTCA CAAGGCAGCT GGAGGGAGTG AGTGTGAGAG TGCGGTACCA
MRPL42P4 GCCTCTGC-T CTTCACAGGC TGAGAC--CA GGGAGATGCT GGCCCAGGAT GCAAAGGC-- -----AGGAG AAGTGTTTCC CCGGTACTGG GAAGACTTTC AATAGTATTA GCCGACTGAC ATGCATAGAA
Consensus g...c..... .........c tg.g...... .....a.... .......... .....g.... .....a...g .........c .c........ ..a....... .......... ........a. ......a...
1041 1170
MRPL42_CDS
MRPL42_mRN ATATTTAAGC AGG-CTAGCA TTTTCAATTT ACAATATTTT CAACTGATAG TAGGTTTATT GGGATGTAAC CCTATGAT-- --AAGTTGAG AAACATCT-- CTTTTTGTGT GTCTACTGTG ATTTAAGTAT
MRPL42P2 ATTTGGAGGC TGGGCATGGT GGCTCACACC TGTAATCCTA CCAGTTTGGG AGGCCAAGGT GGGTGGATCA CCTGAGGTCA AGAATTTGAG ACCACCCTGG CCAACATGGT GAAACCCCAA CTCTACAAAA
MRPL42P5 CAACAACAAC AAA--AATCA AAATCTATGC AAAATTTAAA CCCAATCTTG CGCTAGTCTT GTGGGAATGA AGATTAATTT ACCTAAAAAT GCTCCTCTGG TTTTTGTAAT TCTTTTTGTT ACTTTTTAAA
MRPL42P1 TACTTTATTT AAA------C TTGTAAAATA AATTTGTGTT ACACTATTTG TAAAATTAAT GTGAAAAATA ATTTCATATT CAAAGTCTA- --TTGTTTGA TCTAGTTCTT TTAATAAAGG AACTCTAACT
MRPL42P3 TTTATAAAAC CAT------G AGATCTCACG AGAATGC--- ACTATCACAA GAACAGCATG GAGGAAACCA CCCCCATAAT CCAATCACTT CCCTCCCTAG ACACATGGGG ATTAC----- AATTCAAGAT
MRPL42P4 AGCATGATTC CACAGATCCC CATTGTGGCT GAAATACCTT CCCTTACCTC TTATGGGTAA TTTAAGATTA ACTAAGCCGT TTAGGGTTCT AAAGTTGATT TTTTCTGATT ATCTTCATTA GCCTTATCAG
Consensus ......a... .a........ ...t...... ....t..... .c..t..... .......... ......a..a .........t ..a....... .......... .......... .......... ...t......
1171 1293
MRPL42_CDS
MRPL42_mRN TTTTAATCAT CAGCCAAGCA TTGTTAGTAG TATAAATA-T GATTAATAAA AATGTGCATG GCTTTCCTAC AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA
MRPL42P2 ATACAAAAAT TAGCCGGGCA TGATAGCGGG TGCCTGTAAT CCCAGCTACT CAGGAAACTG GGGCAGCAGA ATCACTTGAA CTTGGGAGGC AGAGGTTGCA GTGAGCCGAG ATCAC
MRPL42P5 AATATAAATT TGGCCAGGCA CGGTGGCTCA CACCTGTAAT ATCAGCTACT CGGGAAGCTG AGGCAGGAGA ATCGCTTGAA CCTGGGAGGC GGAGGTTGCA GTGAGCCGAG GTCCCGCCAC TGC
MRPL42P1 AAGTTTCAAA TGGCCA-GTA AAGTGTGAGG AATAGTGACT AGGAGAGAGT AACGAAATAG TTAATAATGG TGACCCTCTG TTTCCCAAAA GAAAAGTG-- GTTTGCTTTT GTCATTAATG TA
MRPL42P3 GAGATTTGGG TGGAGACACA GCCTAACCAT ATCACCTTGT GTCAGTTCTG TATGGAGATC TTCTGTTAGT GCCTCCTTCA TGTAAATTCT CTTTCTTTCT TTTTATTTCT CTCTCTCTT
MRPL42P4 AGTCAGTACC TTGAACTGTA ATTTTCATAA AATTTTAATT TCCAGTAGAA CATCAATATG AACAAAAACA GCTTCCCATG ACCCTCCAAA TGAAGTAT-G GTCTGGATAT GAGTACAAAG TAC
Consensus .......... t.g......a ...t...... .........t ...ag..... .a...a.... .......... ....c..... .......... .......... .t........ .......... ...