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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 583 Check: 0 ..
Name: MRPL53_CDS Len: 583 Check: 7185 Weight: 1.49
Name: MRPL53_mRNA Len: 583 Check: 7896 Weight: 0.75
Name: MRPL53P1 Len: 583 Check: 6792 Weight: 0.75
Name: Consensus Len: 583 Check: 2732 Weight: 0.00
//
1 130
MRPL53_CDS ATGGCAGCTG CCTTGGCTCG GCTTGGTCTG CGGCCTGTCA AACAGGTTCG GGTTCAGTTC TGTCCCTTCG AGAAAAACGT GGAATCGACG
MRPL53_mRN GTCACC ATGGCAGCTG CCTTGGCTCG GCTTGGTCTG CGGCCTGTCA AACAGGTTCG GGTTCAGTTC TGTCCCTTCG AGAAAAACGT GGAATCGACG
MRPL53P1 TTTTAAATTA ATGGAAATGG CTTTCAGGGC AAGGGTCACC ATGGCAGCCA CCTTGGTTAG GCTTGGGCTC TTGTCTGTCA AGCAGGTTCA GGTTCAATTC TACCCCTTTG AGAA----GT AGAGATGATG
Consensus .......... .......... .......... ....gtcacc ATGGCAGCtg CCTTGGcTcG GCTTGGtCTg cgGcCTGTCA AaCAGGTTCg GGTTCAgTTC TgtCCCTTcG AGAAaaacGT gGAatcGAcG
131 260
MRPL53_CDS AGGACCTTCC TGCAGACGGT GAGCAGTGAG AAGGTCCGCT CCACTAATCT CAACTGCTCA GTGATTGCGG ACGTGAGG-- ---------C ATGACGGCTC CGAGCCCTGC GTGGACGTGC TGTTCGGAGA
MRPL53_mRN AGGACCTTCC TGCAGACGGT GAGCAGTGAG AAGGTCCGCT CCACTAATCT CAACTGCTCA GTGATTGCGG ACGTGAGG-- ---------C ATGACGGCTC CGAGCCCTGC GTGGACGTGC TGTTCGGAGA
MRPL53P1 AGGACCTTCC TCTAGATGAT GAGTAATGAG AAGGTCCACT CCACCAATCT CAACTGCTCA GCTATTGTGG ACATGAGGTG GACATGCAGC ATAATGACTT CGAGCCCTGT GTGGACATGC TGTTCAGAGA
Consensus AGGACCTTCC TgcAGAcGgT GAGcAgTGAG AAGGTCCgCT CCACtAATCT CAACTGCTCA GtgATTGcGG ACgTGAGG.. .........C ATgAcGgCTc CGAGCCCTGc GTGGACgTGC TGTTCgGAGA
261 390
MRPL53_CDS CG-------G GCATCGCCTG ATTATGCGCG GCGCTCATCT CACCGCTCTG GAAATGCTCA CCGCCTTCGC CTCCCACATC CGGGCCAGGG ACGCGGCGGG CAGCGGGGAC AAGCCGGGCG CTGATACTGG
MRPL53_mRN CG-------G GCATCGCCTG ATTATGCGCG GCGCTCATCT CACCGCTCTG GAAATGCTCA CCGCCTTCGC CTCCCACATC CGGGCCAGGG ACGCGGCGGG CAGCGGGGAC AAGCCGGGCG CTGATACTGG
MRPL53P1 TGCTGTGTGG TCATCGCCTC ATTATGTGCT GCACCCATCT CACCACTCTG GAAATGCTCA CTGTCTTTGC CTCCCACATT GAGGCCAGAG ATGTGGCAAG GAGC-----C AAGAATG-TG CTGGTACTGG
Consensus cG.......G gCATCGCCTg ATTATGcGCg GCgCtCATCT CACCgCTCTG GAAATGCTCA CcGcCTTcGC CTCCCACATc cgGGCCAGgG AcGcGGCggG cAGCggggaC AAGccgGgcG CTGaTACTGG
391 520
MRPL53_CDS TCGCTGA
MRPL53_mRN TCGCTGACAG CGCCAAAGAG ACCAACAAGA TGATTTTAGC GTGGACTAGG ACACTTAACC TAAGAAGAGT TTCACTTAAT CATTCAAATC ACTATCTGAA GGGTCACGGA G-------CG CAAAATAAAG
MRPL53P1 ACAATGACAG TGCCAAAAAG ACCAACAAGC TGATGTTAGA CTGGACTAGA ACACTTATC- TAAAAAGAGG TTTACTTAAT CATTCAAATC ACTATCTGGA GGGCCACAGA GTAAGGCCCT CTAAATGCTT
Consensus tCgcTGAcag .gccaaa.ag accaacaag. tgat.ttag. .tggactag. acactta.c. taa.aagag. tt.acttaat cattcaaatc actatctg.a ggg.cac.ga g.......c. c.aaat....
521 583
MRPL53_CDS
MRPL53_mRN TTTAAAACCC TGCTACCACA AAAAAAAAAA AAAAAAA
MRPL53P1 GGCAAGACCA AGATATCATA ATTAGGAAGC TTACTTATGG GGGTGGGAAG CTGAAAGTCC TGT
Consensus ...aa.acc. .g.ta.ca.a a..a..aa.. ..a...a... .......... .......... ...