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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1065 Check: 0 ..
Name: MRPL9_CDS Len: 1065 Check: 7801 Weight: 1.49
Name: MRPL9_mRNA Len: 1065 Check: 2180 Weight: 0.75
Name: MRPL9P1 Len: 1065 Check: 9333 Weight: 0.75
Name: Consensus Len: 1065 Check: 1569 Weight: 0.00
//
1 130
MRPL9_CDS ATGGCGGCGC CCGTTGTCAC GGCC---CCG GGCAGAGCTC TGCTGCGGGC G--GGCGCTG GACGGCTGCT
MRPL9_mRNA TCGGCTAGG TACGAGGCTG GGTTTGAATC GGCCGAGGAT CTGTGCCTGT GTA------C ATGGCGGCGC CCGTTGTCAC GGCC---CCG GGCAGAGCTC TGCTGCGGGC G--GGCGCTG GACGGCTGCT
MRPL9P1 TGTGGCTGTC ATACTTTAAA GGTTACAGAC AAATGGGAAA TTCTTCCAGG GAAAGCAGCC AGGATGACAA AAGTTCCCAC AGAATGTCCT AAGAGAAAT- GGTTGCTGAC TTTGGGGATG TGTAACCTGG
Consensus ...ggct... .......... ggtt..a..c ....g.g.a. .t.t.cc.g. g.a......c AtGgcGgCgc ccGTTgtCAC gGcc...CCg ggcAGAgcTc tGcTGCgGgC g..GGcGcTG gacggCtgct
131 260
MRPL9_CDS TCGGGGAGGC GTCCAGGAGC TACTGCGGCC GC--GACATG AAGG--GAAC GCCCCTGACC TGGCCTGCAA CTTCA----- ---------G CCTTTCTCAA AATCGGGGCA CGGTCATCGT GGAGCGCTGG
MRPL9_mRNA TCGGGGAGGC GTCCAGGAGC TACTGCGGCC GC--GACATG AAGG--GAAC GCCCCTGACC TGGCCTGCAA CTTCA----- ---------G CCTTTCTCAA AATCGGGGCA CGGTCATCGT GGAGCGCTGG
MRPL9P1 GATGGGAGAA GGGAAGAGTC AGAAAAGGCT GACAGTCATC TAGGCCGGAA ATCTCAGTCA TTCAATATGG CTCCAAAGGA ATAAACTATG ACTATGGGAC TGTCGTGCCC TCGGCATTGT GGAGCACTGG
Consensus tcgGGGAGgc GtccAGgagC tactgcGGCc Gc..GaCATg aAGG..GaAc gcCcCtGaCc TggccTgcaa CTtCA..... .........G cCTtTctcAa aaTCGgGgCa cgGtCATcGT GGAGCgCTGG
261 390
MRPL9_CDS -----TGGAA GGTACCGCTG GCCGGGGAGG GCCGGAAGCC GCGCCTGCAC CGGCGACATC GCGTCTATAA GCTGGTGGAG GACACGAAGC ATCGGCCCAA AGAAAACCTG GAGCTCATCC TGACGCAGTC
MRPL9_mRNA -----TGGAA GGTACCGCTG GCCGGGGAGG GCCGGAAGCC GCGCCTGCAC CGGCGACATC GCGTCTATAA GCTGGTGGAG GACACGAAGC ATCGGCCCAA AGAAAACCTG GAGCTCATCC TGACGCAGTC
MRPL9P1 GTGGATGGAA GGTACCACTG GCCAGGGAGG GCCAGAAGCT GCGTCTGCAC CAGCGACACT ACATCGACAA GCTGGTGGAG GACACGGAGC ACTGGCCCAA AGAAAATCTG GAGATCATCT TCACACAGTC
Consensus .....TGGAA GGTACCgCTG GCCgGGGAGG GCCgGAAGCc GCGcCTGCAC CgGCGACAtc gCgTCtAtAA GCTGGTGGAG GACACGaAGC AtcGGCCCAA AGAAAAcCTG GAGcTCATCc TgACgCAGTC
391 520
MRPL9_CDS GGTGGAGAAT GTTGGAGTCC GGGGTGACCT GGTCTCAGTG AAGAAATCTT TAGGCCGGAA TCGACTCCTT CCTCAGGGAC TGGCTGTATA TGCATCCCCT GAAAACAAGA AGCTGTTTGA AGAGGAGAAA
MRPL9_mRNA GGTGGAGAAT GTTGGAGTCC GGGGTGACCT GGTCTCAGTG AAGAAATCTT TAGGCCGGAA TCGACTCCTT CCTCAGGGAC TGGCTGTATA TGCATCCCCT GAAAACAAGA AGCTGTTTGA AGAGGAGAAA
MRPL9P1 TGTGGAGACA CTTGGAGTCT GGGGTGACCT GATCTCAGTA AAGAAATCTG TGGATCGGAA TCAACTCCTT TCTCAGAGAC TGGCTGCATA TGCATCACCT GAAAACAAGA AGCTGTTTGA AGAGGAGAAA
Consensus gGTGGAGAat gTTGGAGTCc GGGGTGACCT GgTCTCAGTg AAGAAATCTt TaGgcCGGAA TCgACTCCTT cCTCAGgGAC TGGCTGtATA TGCATCcCCT GAAAACAAGA AGCTGTTTGA AGAGGAGAAA
521 650
MRPL9_CDS TTGCTGAGAC AAGAAGGAAA ATTAGAGAAG ATCCAGACCA AGGCAGGTGA GGCGACAGTG AAATTTCTAA AAAGCTGTCG CCTGGAGGTA GGGATGAAGA ACAATGTCAA ATGGGAGCTG AACCCTGAAA
MRPL9_mRNA TTGCTGAGAC AAGAAGGAAA ATTAGAGAAG ATCCAGACCA AGGCAGGTGA GGCGACAGTG AAATTTCTAA AAAGCTGTCG CCTGGAGGTA GGGATGAAGA ACAATGTCAA ATGGGAGCTG AACCCTGAAA
MRPL9P1 TTGCTGAGAC CAGGAGGAAA GTTACAGAAG ATCCAGACCA AGGCAGGTGA GGCAACAGTG ACATTTCTGA AAAGCTGTCA CCTGGAGGTA GGGATGAAGA ACAGTGTCAA ACGGGAGCTG AACCCTGAAA
Consensus TTGCTGAGAC aAGaAGGAAA aTTAgAGAAG ATCCAGACCA AGGCAGGTGA GGCgACAGTG AaATTTCTaA AAAGCTGTCg CCTGGAGGTA GGGATGAAGA ACAaTGTCAA AtGGGAGCTG AACCCTGAAA
651 780
MRPL9_CDS TAGTTGCCCG CCACTTCTTT AAGAATCTTG GTGTTGTGGT TGCCCCACAT ACATTAAAGT TACCAGCAGA GCCTATCACA CGGTGGGGCG AGTATTGGTG TGAGGTGACG GTAAATGGGC TTGATACTGT
MRPL9_mRNA TAGTTGCCCG CCACTTCTTT AAGAATCTTG GTGTTGTGGT TGCCCCACAT ACATTAAAGT TACCAGCAGA GCCTATCACA CGGTGGGGCG AGTATTGGTG TGAGGTGACG GTAAATGGGC TTGATACTGT
MRPL9P1 CAGTTGCCTG CCACTTCTTC AAGAATCTTG GTGGTGTGGT CACCCC-CAT ATAATAAAAT TACCGGAAGA GCCCCTCACT CGGTGGGGCA AGTACTGTTG TGAGGTGACG GTAAATGGGC TTGGTACTGT
Consensus tAGTTGCCcG CCACTTCTTt AAGAATCTTG GTGtTGTGGT tgCCCCaCAT AcAtTAAAgT TACCaGcAGA GCCtaTCACa CGGTGGGGCg AGTAtTGgTG TGAGGTGACG GTAAATGGGC TTGaTACTGT
781 910
MRPL9_CDS GAGAGTGCCT ATGTCTGTCG TGAACTTTGA GAAGCCCAAG ACCAAAAGAT ATAAGTACTG GTTAGCCCAG CAAGCTGCCA AGGCTATGGC CCCCACCAGC CCCCAGA--- TCTAA
MRPL9_mRNA GAGAGTGCCT ATGTCTGTCG TGAACTTTGA GAAGCCCAAG ACCAAAAGAT ATAAGTACTG GTTAGCCCAG CAAGCTGCCA AGGCTATGGC CCCCACCAGC CCCCAGA--- TCTAAATCTA CTCTCCCTCC
MRPL9P1 GAGGGTGCCT ATGTCTCTGG TAAACTTTGA GAGGCCCAAA ATCAAAAGAT AGAAGTACTG GTTAGCCCAG CAAGCTGCCA AGGGCATGGC CCC-ACCAGC CTCTAGAGGA TCTAAACCTG TTCTCC-TCC
Consensus GAGaGTGCCT ATGTCTgTcG TgAACTTTGA GAaGCCCAAg AcCAAAAGAT AtAAGTACTG GTTAGCCCAG CAAGCTGCCA AGGctATGGC CCCcACCAGC CcCcAGA... TCTAAa.ct. .tctcc.tcc
911 1040
MRPL9_CDS
MRPL9_mRNA AAGGCAGCAA AGCAGAATCG G--GAGCAGT GGAGCAGAAA TGTGCAAGCA CCCTGATCTC ACTCCCAGCT CTGACCAAAT ACAGAATTTT AGAGAACATC TGAAGACATC AGACTGCACT GGGTTTTCAT
MRPL9P1 AAGGCAGCAA AGCAGAATCA GAGGAGCAGT GGGACCCAAA CAGGCAAGCA CCCTGCTCTC ACTCCCAGCT CTGACAAAAT ATGGAATTTT AGAGAACATA TGGAGACATC AGACTGCCCT GCACAGACAT
Consensus aaggcagcaa agcagaatc. g..gagcagt gg..c..aaa ...gcaagca ccctg.tctc actcccagct ctgac.aaat a..gaatttt agagaacat. tg.agacatc agactgc.ct g......cat
1041 1065
MRPL9_CDS
MRPL9_mRNA GT
MRPL9P1 GTTGAATTCC TTATATTTGC CATCT
Consensus gt........ .......... .....