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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1202 Check: 0 ..
Name: MRPS11_CDS Len: 1202 Check: 5689 Weight: 1.49
Name: MRPS11_mRNA Len: 1202 Check: 6603 Weight: 0.75
Name: MRPS11P1 Len: 1202 Check: 509 Weight: 0.75
Name: Consensus Len: 1202 Check: 4025 Weight: 0.00
//
1 130
MRPS11_CDS
MRPS11_mRN AGTCCCG GAACTGCTAG AACGAACCAT TCGCATATGG AGGGGGTGAC CCACCATCTC AGAA---CAT TAAAAAAGGG AAAGAATCCC CTGGTGAACT ACAGTGAAAG TCTTATTGAG CATTTAAATG
MRPS11P1 TAAAAATAAA TAAATAAAAA AGGGATGATT TAGGATATCT GATAGAAGAA ATTTCTAAGC AGCAAAGCAT TCAAGATGTG ACCTAA-CTG CTTCTAACAA CATATGCTTA TATGTGTGAG CAAATAAATG
Consensus ...a...... .aa.t...a. a..ga....t t.g.atat.. ....g..ga. ....c....c ag.a...cat t.aa.a.g.g a...aa.c.. ct..t.a... ....tg.... t.t...tgag ca..taaatg
131 260
MRPS11_CDS
MRPS11_mRN GAAATAAAAA TATTCAGTGG ACCTAATGAA GAGTAGATGA CTTTCCCTTC TGTCCCCTCC CCGAC--AGG CACTCATGGT ACCGGCGCCG GCGCAGCTGT GACTGTCGC- -TGCAGAC-- GGAAAC--TG
MRPS11P1 ATTCAAAACT GGAACTTATA TTTAAAAGGA AAGCAGATGG GGGTCAATT- TGAGTCATGC AGGTTGTAAG AAATGTGAGT TTTCACTTCT GTGGTCCTG- GACTTTATCC TTGACCACCA GGTAACAATG
Consensus .....aaa.. ....c..... ....aa.g.a .ag.agatg. ...tc..tt. tg...c.t.c ..g....a.g .a.t....gt .....c..c. g.g...ctg. gact.t..c. .tg...ac.. gg.aac..tg
261 390
MRPS11_CDS ATGCA GG-CTG--TG AGAAACGCGG GG-TCGCGGT TCCTGCGGTC C--TGGACT- TGGCCC--CA GA-------- CAGCCGGCAG GGTCGTGGCC AGAACGCCGG
MRPS11_mRN ACTGG----- -GGTCAATTC AAGTCATGCA GG-CTG--TG AGAAACGCGG GG-TCGCGGT TCCTGCGGTC C--TGGACT- TGGCCC--CA GA-------- CAGCCGGCAG GGTCGTGGCC AGAACGCCGG
MRPS11P1 ATTGTCCCCT TGAGCTCACC ACCACCTCCA GGACTGCCTG TGTCACATGA GCCACCCAGA CCCCAAGGAC TGTTAGGCTG TGGCCCTCCT TAATCTTTTC CTCCTGACAG GGTCATGGCC AGGATGCTGG
Consensus a.tg...... .g..c....c a...caTgCA GG.CTG..TG aGaaACgcGg Gg.tCgCgGt tCCtgcGGtC c..TgGaCT. TGGCCC..Ca gA........ CagCcGgCAG GGTCgTGGCC AGaAcGCcGG
391 520
MRPS11_CDS CCGGGACCAT CTGCACAGGC GCTCGACAGC TCCAAGACGC TGCGGCCAAG CAGAAAGTTG AACAGAACGC GG---CTCCC AGCCACACCA AGTTCAGCAT TTACCCTCCC ATTCCAGGAG AGGAGAGCTC
MRPS11_mRN CCGGGACCAT CTGCACAGGC GCTCGACAGC TCCAAGACGC TGCGGCCAAG CAGAAAGTTG AACAGAACGC GG---CTCCC AGCCACACCA AGTTCAGCAT TTACCCTCCC ATTCCAGGAG AGGAGAGCTC
MRPS11P1 TGCAGACCAT CCACACAGGC ACCCAGAAGA TCCAAGACAT TGAGGCCAAG CAGAACATTG AAGAGAAGAT GGTAGCTCCC AGCTACACCA GCTTTAGCAT TTACCGTCCC ATTACAAAAG AAAAAAGCTC
Consensus ccggGACCAT CtgCACAGGC gCtCgacAGc TCCAAGACgc TGcGGCCAAG CAGAAagTTG AAcAGAAcgc GG...CTCCC AGCcACACCA agTTcAGCAT TTACCcTCCC ATTcCAggAG AggAgAGCTC
521 650
MRPS11_CDS TCTGAGGTGG GCAGGAAAGA AATTTGAGGA GATCCCAATT GCACACATTA AAGCATCCCA CAACAACACA CAGATCCAGG TAGTCTCTGC TAGTAATGAG CCCCTTGCCT TTGCTTCCTG TGGCACAGAG
MRPS11_mRN TCTGAGGTGG GCAGGAAAGA AATTTGAGGA GATCCCAATT GCACACATTA AAGCATCCCA CAACAACACA CAGATCCAGG TAGTCTCTGC TAGTAATGAG CCCCTTGCCT TTGCTTCCTG TGGCACAGAG
MRPS11P1 TCTGAGGTGG GCAGGAAAGA AATTTGAGGA GATCCCAACT GCACACATTA GAGCATCCTA CAACAACACA CAGATCCAGG TAATCTCTGC CACTAATCAG CCCCTTGCCC ATACTTCCTG TGGCACAGAG
Consensus TCTGAGGTGG GCAGGAAAGA AATTTGAGGA GATCCCAAtT GCACACATTA aAGCATCCcA CAACAACACA CAGATCCAGG TAgTCTCTGC tAgTAATgAG CCCCTTGCCt tTgCTTCCTG TGGCACAGAG
651 780
MRPS11_CDS GGATTTCGGA ATGCCAAGAA GGGCACAGGC ATCGCAGCAC AGACAGCAGG CATAGCCGCA GCGGCGAGAG CTAAACAAAA GGGCGTGATC CACATCCGAG TTGTGGTGAA AGGCCTGGGG CCAGGACGCT
MRPS11_mRN GGATTTCGGA ATGCCAAGAA GGGCACAGGC ATCGCAGCAC AGACAGCAGG CATAGCCGCA GCGGCGAGAG CTAAACAAAA GGGCGTGATC CACATCCGAG TTGTGGTGAA AGGCCTGGGG CCAGGACGCT
MRPS11P1 GAATTTCTGA ATGCCAAGAA GGGCACAGGC ATTAATGCAC AGACAACAGG CATAGCAGCC GTGACAAAAG CTGCAGGAAA GGGTGTTACC CACATCTGAG TTGTGGTGAA AGGCCAGGGG CCAGGACACC
Consensus GgATTTCgGA ATGCCAAGAA GGGCACAGGC ATcgcaGCAC AGACAgCAGG CATAGCcGCa GcGgCgAgAG CTaaAcaAAA GGGcGTgAtC CACATCcGAG TTGTGGTGAA AGGCCtGGGG CCAGGACgCt
781 910
MRPS11_CDS TGTCTGCCAT GCACGGACTG ATCATGGGCG GCCTGGAAGT GATCTCAATC ACAGACAACA CCCCAATCCC ACACAACGGC TGCCGCCCCA GGAAGGCTCG GAAGCTGTGA
MRPS11_mRN TGTCTGCCAT GCACGGACTG ATCATGGGCG GCCTGGAAGT GATCTCAATC ACAGACAACA CCCCAATCCC ACACAACGGC TGCCGCCCCA GGAAGGCTCG GAAGCTGTGA TGGGAAGGAG GCCTGCACTT
MRPS11P1 TGTCTGCCAT CCAGGGACTG ACCATGGGGG GCCTGGAAGT GATCTCAATC ACAG-CAACA CCCCCATCCC ACACAATGGC TCCTGCCCCA AGAAGGCTCC GAGGCTGTGA GGGAAAGGAA GCTTACACTT
Consensus TGTCTGCCAT gCAcGGACTG AtCATGGGcG GCCTGGAAGT GATCTCAATC ACAGaCAACA CCCCaATCCC ACACAAcGGC TgCcGCCCCA gGAAGGCTCg GAaGCTGTGA .gg.aagga. gc.t.cactt
911 1040
MRPS11_CDS
MRPS11_mRN GGACCTGACC TCAAGCCTCA GCTCCAGTGG GACCTTGTAA AATGCTCCCT GTCAGAGCTC T--CCAGAAT ATG-CTTGTT GGAGATCCTT CAGGCAGTAA GGGAGAGTTT TGCCTCCTTA CACAGTGGCC
MRPS11P1 GAACCTAACC TCAAGTCTCA GCTCCAGTTG GACCTTGCGG AAAGTTCCCT GTCAGAGCTC TTTCCAGAAT ATGGCTTGTT GGAGATCCTT CAGACAGTAT GGGAGAGTTT TGCCTCCTTA TATAGTGTCC
Consensus g.acct.acc tcaag.ctca gctccagt.g gaccttg... aa.g.tccct gtcagagctc t..ccagaat atg.cttgtt ggagatcctt cag.cagta. gggagagttt tgcctcctta .a.agtg.cc
1041 1170
MRPS11_CDS
MRPS11_mRN TTTGCTTGCA CCTCCAGCTG GAGATGGGTG TGCCCCAGAA GTAAGCTTTG CATCTCTT-A CAAGAGGGGA GCTACAGGGG CAGCCGTGGC CTAGGCCCAA ACTCTGCTCT GAGAAAATAA A----TATCT
MRPS11P1 TTTGCTTGCA CCTCCAGCTG GGGGTGGATG TGCCCCAGCA ATGAACTTTG CATCCTTAGA CAAGAGGGGA GCTATGGGGG CAGCTGTGGC CTAGGCCTAA CCTCTGCTCT GAGAAAATAA AATAATGTCT
Consensus tttgcttgca cctccagctg g.g.tgg.tg tgccccag.a .t.a.ctttg catc..t..a caagagggga gcta..gggg cagc.gtggc ctaggcc.aa .ctctgctct gagaaaataa a....t.tct
1171 1202
MRPS11_CDS
MRPS11_mRN GTACCACCTG TCAA
MRPS11P1 GTACCATCTG TTGTAAATAA ATAAATAGAA AG
Consensus gtacca.ctg t......... .......... ..