Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 720 Check: 0 ..
Name: MRPS16_CDS Len: 720 Check: 861 Weight: 1.51
Name: MRPS16_mRNA Len: 720 Check: 6349 Weight: 0.88
Name: MRPS16P2 Len: 720 Check: 8696 Weight: 0.78
Name: MRPS16P3 Len: 720 Check: 7953 Weight: 0.78
Name: MRPS16P1 Len: 720 Check: 1657 Weight: 1.05
Name: Consensus Len: 720 Check: 349 Weight: 0.00
//
1 130
MRPS16_CDS
MRPS16_mRN CAGGTTCT TTCTGTGTTT GTTCTCTGCC CTGCCAAGGC CGTAGAGCTG GTGCGTGCGG GTAGCGGGGC TCTCCGAGGA
MRPS16P2 G GTAGCCAGGT GTCACGGCCC AGTGTCCACC TGCAGCTGCT TTCTGTGTCA GTCCTCTGCA CCGCCAAGGT CATAGAGGTG GTTGGTGTGG GTAGTGGGAC ACTCCAAGGA
MRPS16P3 G ATGGCTGGGT GGTGCAGCCT AGTGTCCACC TGCAGCTGCC TTCTGTGTCA GTCCTCTGCC CCGCCAAGGC TGTAGAGCTT GTCCATGCGG GTAGCAGGAT GCTCCAAGGA
MRPS16P1 ACTGAGGCTT TGTGGCTTGG GTCGCCAG-T GGAGCAGCCC AGTGTCTGGC TGCAGCGAGC CTCTGCTTCG ATGCTTGGCC CTGCCAAGGC GGTGGAGCCG GTCGGTGAAA ATAG------ ----------
Consensus .......... .........g .t.gc..g.t g...c.gcc. agtgtc...c tgcagc.... .tctg..tc. .t.ct..gcc c.gccaaggc .gt.gagc.g gt..gtg... .tag...... ..........
131 260
MRPS16_CDS A TGGTCCACCT CACTACTCTC CTCTG----- ---CAAGGCC TACCGTGGGG GCCACTTAAC CATCCGCCTT GCCCTGGGTG GCTGCACCAA TCGGCCGTTC TACCGCATTG
MRPS16_mRN GCCGCACGCC GGCGGCACCA TGGTCCACCT CACTACTCTC CTCTG----- ---CAAGGCC TACCGTGGGG GCCACTTAAC CATCCGCCTT GCCCTGGGTG GCTGCACCAA TCGGCCGTTC TACCGCATTG
MRPS16P2 GCCACATGCC AGCCGCACCA TGGTCCACCT CACTACTCTC CTCTG----- ---CAAGGCC TACCATGGGG GCCACTTAAC CATCTGCCTT GCCCTGGGCA GCTTTGCCAA CCGGCCCTTT TACACCATTG
MRPS16P3 GCTGCGCACT GGCCACACCA TGGTCCACCT CACTACTCCC CTCTG----- ---CAAGGCC TATTACAGGG GCCACTTAAC GATCTGCCTT GCCCTGGGTG GCTGCACCAA CCAGCCCTTC TACCGCATTG
MRPS16P1 -CTGCACACT GGCTGC-CCA ATGTCCACCT CACTCTTCTC CTCTGTGTAT ATCCTAGGCG TACCGTGGAT TCACCTTCAC CATCCTCTGA GCCCTGGGTG GCTGCACCAA CTGGCCCTTC CACGGCACTG
Consensus .c.gcac.c. ggc.gc.ccA tgGTCCACCT CACTacTCtC CTCTG..... ...CaAGGCc TAccgtgGgg gCcaCTTaAC cATCcgCctt GCCCTGGGtg GCTgcaCCAA ccgGCCcTTc tACcgCAtTG
261 390
MRPS16_CDS TGGCTGCTCA CAACAAGTGT CCCAGGGATG GCCGTTTCGT AGAGCAGCTG GGCTCCTATG ATCCATTGCC CAACAGTCAT GGAGAAAAAC TCGTTGCCCT CAACCTAGAC AGGATCCGTC ATTGGATTGG
MRPS16_mRN TGGCTGCTCA CAACAAGTGT CCCAGGGATG GCCGTTTCGT AGAGCAGCTG GGCTCCTATG ATCCATTGCC CAACAGTCAT GGAGAAAAAC TCGTTGCCCT CAACCTAGAC AGGATCCGTC ATTGGATTGG
MRPS16P2 TGGCTGCTCA CAGCAAGTGT CCCAGGGATG GTCTTTTGGT AGAGCAGCTG GGATCCTATG ATTCATTTCC CAACAGTCAT GGGGAAAATC TCATTGCCCT CAACCTGGAC AGGATCCAGC ATTGGATTGG
MRPS16P3 TGGCTGCTCA CAG---GTGT CCCAGGGATG GCCGTTTTGT AGAGCAGCTG GGCTCCTATG ATCCATTGCC CAACAGTCAT AGAGAAAAAC TTGCTGTCCT CAAACTGGAC TGGATCCATC ATTGGATTGG
MRPS16P1 TGTCTGCTCA CAG---GTGT CCCAGGAACA GCCATTTCAT AGAGCAGTTG GGCTCCTATG GTCCACTGCC CAACAGTCAT TAAGAGCAAC TCGTTCCCCT CAACCTGGAG AGGATCCGGC ATTGGGTTGG
Consensus TGgCTGCTCA CAgcaaGTGT CCCAGGgAtg GcCgTTTcgT AGAGCAGcTG GGcTCCTATG aTcCAtTgCC CAACAGTCAT ggaGAaaAaC TcgtTgcCCT CAAcCTgGAc aGGATCCgtC ATTGGaTTGG
391 520
MRPS16_CDS CTGCGGGGCC CACCTCTCT- AAGCCTATGG AAAAGCTTCT GGGTCTTGCT GGCTTTTTCC CTCTGCATCC TATGATGATC ACAAATGCTG AGAGACTGCG AAGGAAACGG GCACGTGAAG TCCTGTTAGC
MRPS16_mRN CTGCGGGGCC CACCTCTCT- AAGCCTATGG AAAAGCTTCT GGGTCTTGCT GGCTTTTTCC CTCTGCATCC TATGATGATC ACAAATGCTG AGAGACTGCG AAGGAAACGG GCACGTGAAG TCCTGTTAGC
MRPS16P2 CTGTGCTACC CACCTCTTTT AAACCTATGG AAAAGCTTCT GGTTCTTGCT GGCTTTTTCC CTCTGCATCG TAAGATGATC ACAAATGCTG AGAGACTGTG AAGGAAATAG GCACATGAAG TCCTCTTACT
MRPS16P3 CTGTGGGGCC CACCTCTCT- AAGCCTATGG AAAAGCTAGT GGGTCTTGCT GGGTTTTTCC CTGTGCATCC TATGATGATC AGAAGTGCCG TGAGACTATG AAGGAAATGG GCACCTGAAG TCCTCTTAGC
MRPS16P1 CTGTGGGGCC C--------- --GCCTATGG AAAAGCTTCT CGGTCTTTCT GGCTTTTTTC CCCTGCATTC TATGCTGACC ACAACTGCTG AGTGACTGCA AAGAAAACAG GCACATGAAG TTCTCTTAGC
Consensus CTGtGgggCC Cacctctct. aagCCTATGG AAAAGCTtcT gGgTCTTgCT GGcTTTTTcC CtcTGCATcc TAtGaTGAtC AcAAaTGCtG aGaGACTgcg AAGgAAAcgG GCAC.TGAAG TcCTcTTAgc
521 650
MRPS16_CDS TTCTCAGAAA ACAGATGCAG AAGCTACAGA TACAGAGGCT ACAGAAACAT AA
MRPS16_mRN TTCTCAGAAA ACAGATGCAG AAGCTACAGA TACAGAGGCT ACAGAAACAT AAATGAGCTG ACTTTAGTGA GCATAGCAGT GGGAACAAGG TCAAGGTCCT TTTGAAACAC ---TGCAGCG ATCTTAATTT
MRPS16P2 TTCTCAGAAA ACAGATGCAG AGGCTACAGA ---------- -----AACAT AAGTGAGCCG ACTTCAGTGA GCATAG-GGT GGGAACAAGG TCAAGGTCCT CTTAAAACAC CA-TGCAGAG ATTTTAGTTT
MRPS16P3 TTCTCAGAAA ACAGATGCAG AGGCTACAGA TACAGAGGCT ACAGGAACAC AAGTGAGCTG ACTTCAGTGA GCATAGCAGT GAGAACAGGG TCAAGGTCCT CTTAAAATAC TG-TGCAGAG ATCTTAATTT
MRPS16P1 TTTTCAGAAA ACAGATACAA AGGCTATAGG ---------- -----AACAG AAGTGAGTTC ACTTCAGTGA GCAGAGCAGT GGGAACAAGA CCAAGGGCTT CTCAAAATGC TTCTGCAGAG ATCTTAATTT
Consensus TTcTCAGAAA ACAGATgCAg AgGCTAcAGa tacagaggct acag.AACAt AAgtgag.t. acttcagtga gca.agcagt gggaacaag. .caagg.c.t ct.aaaa..c ...tgcagag atcttaattt
651 720
MRPS16_CDS
MRPS16_mRN TGTTAGATTT GGAGTTCAAT AAATGGAGT
MRPS16P2 TGTTAGACTT GGGGGTCAAT AAATGGAGTG TCCTGAGTCA CCCTTGTTCT TCTGGCCTGG CCTGCACAGG
MRPS16P3 TGTTAGATTC AGAGGTCAAT AAATGGAGTG TCCTGAGTCA CCCTTGCTCT TCTG
MRPS16P1 TGTTAGATTT AGAGGTCAAT AAATGGAGTT TTCTGAGTCA CTCGTGCTCT TCTGGCCTGG CCTGAGCA
Consensus tgttagattt .gaggtcaat aaatggagt. t.ctgagtca c.c.tg.tct tctg...... ..........