Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 668 Check: 0 ..
Name: MRPS17_CDS Len: 668 Check: 8560 Weight: 1.78
Name: MRPS17_mRNA Len: 668 Check: 6501 Weight: 0.77
Name: MRPS17P1 Len: 668 Check: 5113 Weight: 0.37
Name: MRPS17P2 Len: 668 Check: 5725 Weight: 0.37
Name: MRPS17P9 Len: 668 Check: 7179 Weight: 0.71
Name: MRPS17P4 Len: 668 Check: 5600 Weight: 0.85
Name: MRPS17P7 Len: 668 Check: 5600 Weight: 0.85
Name: MRPS17P8 Len: 668 Check: 5600 Weight: 0.85
Name: MRPS17P3 Len: 668 Check: 101 Weight: 1.25
Name: MRPS17P6 Len: 668 Check: 2010 Weight: 1.53
Name: MRPS17P5 Len: 668 Check: 999 Weight: 1.66
Name: Consensus Len: 668 Check: 7597 Weight: 0.00
//
1 130
MRPS17_CDS ATGTCCGTAG TTCGCTCATC CGTCCATGCC AGATGGATTG TGGGGAAGGT GATTGGGACA
MRPS17_mRN A GTCTTG-GCG GAGGTGACCA AAGCCACGTA ATGTCCGTAG TTCGCTCATC CGTCCATGCC AGATGGATTG TGGGGAAGGT GATTGGGACA
MRPS17P1 ATTGAAT CGAAAGAACA ACTGG--AGG TGGCTGCACA GTCGTG-GCG GAGGTGACCA AAGCCACATA ATGTCCGTAG TTCATTCATC CACCCATGCC AAGTGGATCG TGGGGAAGGT GATTGGGACA
MRPS17P2 ATTGAAT CGAAAGAACA ACTGG--AGG TGGCTGCACA GTCGTG-GCG GAGGTGACCA AAGCCACATA ATGTCCGTAG TTCATTCATC CATCCATGCC AAGTGGATCG TGGGGAAGGT GATTGGGACA
MRPS17P9 GCGA CCGGCACTCC ACAGGTCAGA TGGCTGCAAA GCAGTG-GCG GAGGTGACCA TAGCCACATA ATGTCCATAG TTCGTTTATC CGTCCATGCC AAATGGATTA TGGGGAAGGT GACTGGGACA
MRPS17P4 AGGAA GGCAGGCTCC CTGGGGCAGG TGGCTGCACA GTCATG-GCG GAGGTGACCA AAGCCACATC ATGTCCGTCG TTCGTTCATC TGTCCATGCC AGATGGATCG TGGGGAAGGT GATTGGGACA
MRPS17P7 AGGAA GGCAGGCTCC CTGGGGCAGG TGGCTGCACA GTCATG-GCG GAGGTGACCA AAGCCACATC ATGTCCGTCG TTCGTTCATC TGTCCATGCC AGATGGATCG TGGGGAAGGT GATTGGGACA
MRPS17P8 AGGAA GGCAGGCTCC CTGGGGCAGG TGGCTGCACA GTCATG-GCG GAGGTGACCA AAGCCACATC ATGTCCGTCG TTCGTTCATC TGTCCATGCC AGATGGATCG TGGGGAAGGT GATTGGGACA
MRPS17P3 CCAG CAAGTGCTCC AACAGCCATG CAACAGAACA ATAGAGCTAG GAAATAACAA AAGCCACATC ATGTCGATAG CACAATCATC TGATCATGCC AAACAAATAA CGGGGAAGGT GATTATGACA
MRPS17P6 AAAAAAAAAA AAAAGGATTC TTTCTCGTTA TGGTTTTGAT TTGCATTTCT CTGATGAATA ATCACAC--- -TGACCATTT TTCAT--ATG CTTATTTGCC ATTTGTATAT CTACTTGGGA GAAATGTCTA
MRPS17P5 AATACA CTTGGTAACC AAAGCTTTGT AATATTAACA GTATATTTAA CAG---TCCC AGTCAAATGA ATTACTGGGA AAAGTAATAG AGATGGCAAC AAAAACAAAC ACATAAACAT AAAACAACAA
Consensus .....a..aa ....gg.tcc ...g....g. tgg.t..aca gt...g..cg gag.tgacca aagccac.t. aTgtCcgt.g ttcgttcatc cgtccatgcC A.atggAt.g tggggaaggt gAttgggacA
131 260
MRPS17_CDS AAAATG-CAA AAGACTGCTA AAGTGAGAGT GACCAGGCTT GTTCTGGATC CCTATTTATT AAAGTATTTT AATAAGCGGA AAACCTACTT TGCTCACGAT GCCCTTCAGC AGTGCACAGT TGGGGATATT
MRPS17_mRN AAAATG-CAA AAGACTGCTA AAGTGAGAGT GACCAGGCTT GTTCTGGATC CCTATTTATT AAAGTATTTT AATAAGCGGA AAACCTACTT TGCTCACGAT GCCCTTCAGC AGTGCACAGT TGGGGATATT
MRPS17P1 AAAATG-CAA AAGACTGCTA AAGTGAGAGT GACCAGGCTT GTTCTGGATC CCTATTTATT AAAGTATTAC AATAAGCGGA AAACCTACTT TGCTCACGAT GCCCTTCAGC AGTGCACAGT TGGTGATACT
MRPS17P2 AAAATG-CAA AAGACTGCTA AAGTGAGAGT GACCAGGCTT GTTCTGGATC CCTATTTATT AAAGTATTAC AATAAGCGGA AAACCTACTT TGCTCACGAT GCCCTTCAGC AGTGCACAGT TGGTGATACT
MRPS17P9 AAAATG-CAA AAGACTGCTA AAGTGAGAGT GATCAGGCTT GTTCTGGATC CCCATTTATT AAAGTATTAT AATAAGCAAA AAACGTACTT TGCTCACAAT GCCCTTCAGC AGTGCACAAT TGGGGATATC
MRPS17P4 AAAATA-CAA AAGACTGCTA AAGCGAGAGT GACCGGGCTT GTTCTGGATC CCTATTTATT AAAGTATTAT AATAAGTGGA AAACCTCCTT TGTTCACGAT GGCCTTCGGC AGTGCACAGC TGGGGATATC
MRPS17P7 AAAATA-CAA AAGACTGCTA AAGCGAGAGT GACCGGGCTT GTTCTGGATC CCTATTTATT AAAGTATTAT AATAAGTGGA AAACCTCCTT TGTTCACGAT GGCCTTCGGC AGTGCACAGC TGGGGATATC
MRPS17P8 AAAATA-CAA AAGACTGCTA AAGCGAGAGT GACCGGGCTT GTTCTGGATC CCTATTTATT AAAGTATTAT AATAAGTGGA AAACCTCCTT TGTTCACGAT GGCCTTCGGC AGTGCACAGC TGGGGATATC
MRPS17P3 GCAATG-CAA AAAGCTACTA AAGTGATAGT GACCAGGCTT GTTCTGGATT CCTATTTAAT AAGGTATTTT AATAAGTGAA AGACCTGCTT --CACTCAGT GTTTTTCAGC AGTGAACAGT TGAAGACACT
MRPS17P6 TTCAGGTCCT TTGCCAATTT TCTTTTTAAT TCAGGGGCCA GTTTTGCCAA TTTTTAAATT GGATTATTTG TCTTTATATT GTTGGTTTTA AGAGTTCTTT GTATATTT-- TGGACACAGT TGAGAATTTT
MRPS17P5 CTATACACAC ACAAAGGAGA ATGGTGATGG GTGCAGG-TT GGTCAGGATT CTTATTTCCA CAGTGTTTTA AAAACCTGAA GAACCTACTT TGTTCACTTG ATACATCAGC AATACATGGT TGAGGACATT
Consensus aaaatg.Caa aagactgcta aagtgagagt gaccaGGctt GtTctGgatc ccTaTttatt aaagtaTTtt aataagtgga aaaccTacTt tg.tcaCgat g.cctTcagc agtgcAcaGt TGgggAtatt
261 390
MRPS17_CDS GTGCTTCTCA GAGCTTTACC TGTTCCACGA GCAAAGCATG TGAAACATGA ACTGGCTGAG ATCGTTTTCA AAGTTGGAAA AGTCATAGAT CCAGTGACAG GAAAGCCCTG TGCTGGAACT A-----CCTA
MRPS17_mRN GTGCTTCTCA GAGCTTTACC TGTTCCACGA GCAAAGCATG TGAAACATGA ACTGGCTGAG ATCGTTTTCA AAGTTGGAAA AGTCATAGAT CCAGTGACAG GAAAGCCCTG TGCTGGAACT A-----CCTA
MRPS17P1 GTGCTTCTCA GAGCTTTACC TGTTCCGCGA ACAAAGCATG TGAAACATGA ACTGGCCGAG ATTGTTTTCA AAGTTGGAAA AATCATAAAT CCAGTGACAG GAAAGCCCTG TGCAGGAATT A-----CCTA
MRPS17P2 GTGCTTCTCA GAGCTTTACC TGTTCCGCGA ACAAAGCATG TGAAACATGA ACTGGCCGAG ATTGTTTTCA AAGTTGGAAA AATCATAAAT CCAGTGACAG GAAAGCCCTG TGCAGGAATT A-----CCTA
MRPS17P9 GTGCTTCTCA AAGCTTTACC TGTTCCACGA ACAAAGCATG TGAAACATGA ACTGGCTGAG ATTGTTTTCA AAGTTGGAAA ACTCGTAGAT CCTGTGACAG GAAAACCTTG TGCAGGAACT A-----CCTA
MRPS17P4 GTGCTTCTCA GAGCTTTACC TGTCCCATGA ACGAAGCATG TGAAACATGA ACAGGCCAAG ATCATTTTCA AAGTTGGAAA AGTCATAGAT CCAGTGACAG GAAAGCCCCG TGCAGGAACT A-----CCTA
MRPS17P7 GTGCTTCTCA GAGCTTTACC TGTCCCATGA ACGAAGCATG TGAAACATGA ACAGGCCAAG ATCATTTTCA AAGTTGGAAA AGTCATAGAT CCAGTGACAG GAAAGCCCCG TGCAGGAACT A-----CCTA
MRPS17P8 GTGCTTCTCA GAGCTTTACC TGTCCCATGA ACGAAGCATG TGAAACATGA ACAGGCCAAG ATCATTTTCA AAGTTGGAAA AGTCATAGAT CCAGTGACAG GAAAGCCCCG TGCAGGAACT A-----CCTA
MRPS17P3 GCACTTCTCA AACCTTTATC TGTTTCATGA ATGAACAGTG TGAAACATGA ACTGGCTGAG ATAATTTTTA TATTTGGAAA AGTCATAGAT CCAGTGACAG GAAAACTCTG T--AAGAATT A-----CCAA
MRPS17P6 GTGCTTCTGA AAGCTTTAAC TGTTCC---- ACAAAGTCCA TGAAACATGA ACTGACTGAG ATAATTTTTC AAGTTAGAAG AGTCATA--- ---GTGATAG GAAACCGTTG TTCAGGAACT A-----CCTA
MRPS17P5 TTGTTTCTCA AAAGTACTCC TATTTTACAA ACTAAGATAA TGATACACAA TTTGCCTGAG ATAATTTTCA AAGTTGGAAA AGTCATAGAT CCAGTAACAG AAAAAC-CTG GGCAGGAACT ATTACACTTA
Consensus gtgcTTCTcA gAgcTttacC TgTtccacga acaAAgcatg TGAaACAtgA actGgCtgAG AT.aTTTTca aAgTTgGAAa AgTCATAgat ccaGTgAcAG gAAAgCcctG tgcagGAAcT A.....CctA
391 520
MRPS17_CDS CCTGGAGAGT CCGTTGAGTT CGGAAACCAC CCAGCTAAGC AAAAATCTGG AAGAACTCAA TATCTCTTCA GCACAGTGA
MRPS17_mRN CCTGGAGAGT CCGTTGAGTT CGGAAACCAC CCAGCTAAGC AAAAATCTGG AAGAACTCAA TATCTCTTCA GCACAGTGAA GCGGGAGTGG AAGAAGGATC TAAAGGGAAA AACTGA-CAT GTTT----AT
MRPS17P1 CCTAGAGAGT CCATTGAGTT TGGAAACCAC CCAGCTAAGC AAAAATCTGG AAGAACTCAA TATCTCTTCA GCACAGTGGA GGAGGAGTGG AAGAAGGCAC TAAAGGGAAA GATTGA-CAT GTTT----AT
MRPS17P2 CCTAGAGAGT CCATTGAGTT TGGAAACCAC CCAGCTAAGC AAAAATCTGG AAGAACTCAA TATCTCTTCA GCACAGTGGA GGAGGAGTGG AAGAAGGCAC TAAAGGGAAA GATTGA-CAT GTTT----AT
MRPS17P9 TCTGGAGAGT CCATTGAGTT CGGAAACCAC CCAGGTAAGC AAAAATCTGA AAGAACTCAA TATCTCTTCA GCACAGTGAA GGAAGAATGG AAGAAGAAGC CAAAGGGAAA GATTTA-CAT GTTTGTTTAT
MRPS17P4 CCTGGAGAGT CTGTTGAGTT TAGAAACTAC CCAGCTAAGC AAAAATCTGG AAGAACTCAG TATCTCTTCG GCACACTGAA GGAGGAGTGG AAGGAG---C TAAAGGGAAA GATTGA-CAT GTTT----AT
MRPS17P7 CCTGGAGAGT CTGTTGAGTT TAGAAACTAC CCAGCTAAGC AAAAATCTGG AAGAACTCAG TATCTCTTCG GCACACTGAA GGAGGAGTGG AAGGAG---C TAAAGGGAAA GATTGA-CAT GTTT----AT
MRPS17P8 CCTGGAGAGT CTGTTGAGTT TAGAAACTAC CCAGCTAAGC AAAAATCTGG AAGAACTCAG TATCTCTTCG GCACACTGAA GGAGGAGTGG AAGGAG---C TAAAGGGAAA GATTGA-CAT GTTT----AT
MRPS17P3 CCTGGAGAGT TCAGTCAGTT TGGGAACTAT CCAGCTAAAC AAAAATCTAG AAGCACTCAA AATCTTTTCA ACACTGAGGA TAAGAAGGAG CCAAATAATA TTTAATTTTC -CTTTA-TAT GTTT---TAT
MRPS17P6 CCTGGAGT-T CCAGTCAGTT TGGAAGCCAC CCACATATCC AAAAAGCTAA AAGAATTCAA TAT-TTTTCT TCAGTATCAT AAAAGAAAAA TAGAAGATGA GAAAGGGGAA TATTTA-CAA GTTT----AT
MRPS17P5 CCCACAAAAT TTAATCTCTT GAGAAACT-C TCAG-TAAAA AAAAATCTCA AAGGGATTGA AAAGGTAGCA ACAGAAGAGA TTTATAGATT CACTTTATAG AAAAATAATA GCTTTAGCTT TCATTATTTT
Consensus CCtggAgagT ccatTgagTT tgGaAaCcac cCAgcTAagc AAAAAtCTgg AAGaacTcaa tAtctcttCa gCAca.tgaa ..a.gag..g .ag.ag.... .aaagggaaa gatt.a.cat gttt....at
521 650
MRPS17_CDS
MRPS17_mRN GTTATGGAAA AAGAAATTTT TCTAAGTTTC ATCACAAACT GTGTCCAGTT TCTCT-GTGG TGTTTATGAA ATAGC-TAAA AGCAAATGAA GTAAAGGGCA TACTATGGTT TTTCAC
MRPS17P1 GTTATGGAAA AAGAAATTTT TCTAAGTTGC ATTGCAAACT GTGTCCAGTT TATCT-GTGA TGTTTATGAA ATAGC-TAAA AGCAAATGAA G-----GGCA TATTATGGTT TTTCATTTAA AAAAAAAAAA
MRPS17P2 GTTATGGAAA AAGAAATTTT TCTAAGTTGC ATTGCAAACT GTGTCCAGTT TATCT-GTGA TGTTTATGAA ATAGC-TAAA AGCAAATGAA G-----GGCA TATTATGGTT TTTCATTTAA AAAAAAAAAA
MRPS17P9 TTTATGGAAA AAGAAATTTT TCTAAGTTTC ATCACAAACT GTGTCCAATT TCTCTTGTGG TATTTATGAA ATAGC-TAAA AGCAAATGAA GTAAAGGGCA TATTATGGTT TTTCACAAAG GTTTATGGTC
MRPS17P4 GTTATGCAAA AATAAATTTT TCAAAGCTTC ATCCCC--CC GCCCCCCAAA AAAAA-GAAC AGTGAAGAAT TGTGT-CAGA GGAAGAGAAA GTTTTCCAAA CTTTCTTCAA TTTACTTACT TGGTCAATTA
MRPS17P7 GTTATGCAAA AATAAATTTT TCAAAGCTTC ATCCCC--CC GCCCCCCAAA AAAAA-GAAC AGTGAAGAAT TGTGT-CAGA GGAAGAGAAA GTTTTCCAAA CTTTCTTCAA TTTACTTACT TGGTCAATTA
MRPS17P8 GTTATGCAAA AATAAATTTT TCAAAGCTTC ATCCCC--CC GCCCCCCAAA AAAAA-GAAC AGTGAAGAAT TGTGT-CAGA GGAAGAGAAA GTTTTCCAAA CTTTCTTCAA TTTACTTACT TGGTCAATTA
MRPS17P3 TTTATTTTAT TTTATTTTAT TTTATTTTAT TTTATTTTAT TTTATTTTAT TTTATTTTGA GGGACAGGGT CTTGCTCTGT TGCTTAGGC- -TAGAGTGCA GTGGAGTGAT CATAGCTACT GTAGCCTCAA
MRPS17P6 TTTATGAAAA AATAAGCTTT TTTAGGTTTC ATTACAAACA -TGTCCAATT TCACTTCTGT CATTTATGAA ATAAC-TAAA AGTAGATGAA GTACCTTTTT TTTTTTTTGA GACAGGGTCT TGTTCTGT--
MRPS17P5 CTAGTGCATC TAATTTCCTT TTTAAATATA TAAACTAGCT AAGACTAAGT AAAA--GGCT TGTTATAGAT GATGTTTTTT TATAAAGAA- -TTACAGTCA TAGTTCAGAC TACCTTCTCA GTGTCTCTTT
Consensus .ttatg.aaa aa.aa.tttt t.taagtttc at.ac...c. ....cc.a.t ..a...g... .gt..a.ga. ...g...a.a .g.a.a..aa gt.......a ..tt.t.... t.t.....c. ...tc..t..
651 668
MRPS17_CDS
MRPS17_mRN
MRPS17P1 GAACTGACCA ACTATGC
MRPS17P2 GAACTGACCA ACTATGC
MRPS17P9 ATGCTTCA
MRPS17P4 AAACCCAGAC ATTGAGT
MRPS17P7 AAACCCAGAC ATTGAGT
MRPS17P8 AAACCCAGAC ATTGAGT
MRPS17P3 ACTGCTGGGC TT
MRPS17P6 -CACCCAAGC -TGGAGTG
MRPS17P5 TTTCCAA
Consensus ...cc.a... ........