Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1121 Check: 0 ..
Name: MRPS18A_CDS Len: 1121 Check: 2872 Weight: 1.49
Name: MRPS18A_mRNA Len: 1121 Check: 8229 Weight: 0.75
Name: MRPS18AP1 Len: 1121 Check: 5098 Weight: 0.75
Name: Consensus Len: 1121 Check: 1602 Weight: 0.00
//
1 130
MRPS18A_CD ATGGC GGCCCTCAAG GCTCTGGTGT CCGGCTGTGG GCGGCTTCTC CGTGGGCTAC TAGCGGGCCC GGCAGCGACC AGCTGGTCTC
MRPS18A_mR AGGTTTT TGAAGATGGC GGCCCTCAAG GCTCTGGTGT CCGGCTGTGG GCGGCTTCTC CGTGGGCTAC TAGCGGGCCC GGCAGCGACC AGCTGGTCTC
MRPS18AP1 CATTTGAAAA TCAATCATTG TGGAGGTCAG GGTTGGTTTT TCAAGATGGC GGCCTTTGAG GCTCTGGTGT CTGGCTGTGG GCAGCTTCCG TGTGGGCTCC TAGCAGGCCC AGCAGTGACC AGCTGGTCTC
Consensus .......... .......... .......... ....ggtttt t.aagATGGC GGCCcTcaAG GCTCTGGTGT CcGGCTGTGG GCgGCTTCtc cGTGGGCTaC TAGCgGGCCC gGCAGcGACC AGCTGGTCTC
131 260
MRPS18A_CD GGCTTCCAGC TCGCGGGTTC AGGGAAGTGG TGGAGACCCA AGAAGGGAAG ACAACTATAA TTGAAGGCCG TATCACAGCG ACTCCCAAGG AGAGTCCAAA TCCTCCTAAC CCCTCTGGCC AGTGCCCCAT
MRPS18A_mR GGCTTCCAGC TCGCGGGTTC AGGGAAGTGG TGGAGACCCA AGAAGGGAAG ACAACTATAA TTGAAGGCCG TATCACAGCG ACTCCCAAGG AGAGTCCAAA TCCTCCTAAC CCCTCTGGCC AGTGCCCCAT
MRPS18AP1 AGCTTCCAGC TCGTGGTTTC AGGGAAGTGG TGGAAATCCA AGAAGGAAAG ACAACTATAA TTGAAGGCCG TATCACAGCG ACTCCCAAGG AGAGTCCAAA TCCTCCTAAC CCCTCTGGCC AGTGCCCCAT
Consensus gGCTTCCAGC TCGcGGgTTC AGGGAAGTGG TGGAgAcCCA AGAAGGgAAG ACAACTATAA TTGAAGGCCG TATCACAGCG ACTCCCAAGG AGAGTCCAAA TCCTCCTAAC CCCTCTGGCC AGTGCCCCAT
261 390
MRPS18A_CD CTGCCGTTGG AACCTGAAGC ACAAGTATAA CTATGACGAT GTTCTGCTGC TTAGCCAGTT CATCCGGCCT CATGGAGGCA TGCTGCCCCG AAAGATCACA GGCCTATGCC AGGAAGAACA CCGCAAGATC
MRPS18A_mR CTGCCGTTGG AACCTGAAGC ACAAGTATAA CTATGACGAT GTTCTGCTGC TTAGCCAGTT CATCCGGCCT CATGGAGGCA TGCTGCCCCG AAAGATCACA GGCCTATGCC AGGAAGAACA CCGCAAGATC
MRPS18AP1 CTGCCACTGG AACCTGAACC ACAAGTAAAA CTATGATGAT GTTTTGCTGC TTAGCCAGTT CATCCAGCCC CATGGAGGCA TGCTGCCCCG AAAGATCACA GGCCTATGAC GGGAAGAGAA CTGCAAGATT
Consensus CTGCCgtTGG AACCTGAAgC ACAAGTAtAA CTATGAcGAT GTTcTGCTGC TTAGCCAGTT CATCCgGCCt CATGGAGGCA TGCTGCCCCG AAAGATCACA GGCCTATGcC aGGAAGAacA CcGCAAGATc
391 520
MRPS18A_CD GAGGAGTGTG TGAAGATGGC CCACCGAGCA GGTCTATTAC CAAATCACAG GCCTCGGCTT CCTGAAGGAG TTGTTCCGAA GAGCAAACCC CAACTCAACC GGTACCTGAC GCGCTGGGCT CCTGGCTCCG
MRPS18A_mR GAGGAGTGTG TGAAGATGGC CCACCGAGCA GGTCTATTAC CAAATCACAG GCCTCGGCTT CCTGAAGGAG TTGTTCCGAA GAGCAAACCC CAACTCAACC GGTACCTGAC GCGCTGGGCT CCTGGCTCCG
MRPS18AP1 GAGGGGTGTG TGAAGATGGC CTACCGAGCA GGTCTGTTAC CAAATCACAG GCCTCAGCTT CCTGAAGGAG TTGTTCCAAA GGGCAAACCC CAATTCAACC AGTACCTGAC CCACTGGGGT CCCCGCACCC
Consensus GAGGaGTGTG TGAAGATGGC CcACCGAGCA GGTCTaTTAC CAAATCACAG GCCTCgGCTT CCTGAAGGAG TTGTTCCgAA GaGCAAACCC CAAcTCAACC gGTACCTGAC gCgCTGGGcT CCtgGCtCCg
521 650
MRPS18A_CD TCAAGCCCAT CTACAAAAAA -GGCCCCCGC TGGAACAGGG TGCGCATGCC CGTGGGGTCA CCCCTTCTGA GGGACAATGT CTGCTACTCA AGAACACCTT GGAAGCTGTA TCACTGA
MRPS18A_mR TCAAGCCCAT CTACAAAAAA -GGCCCCCGC TGGAACAGGG TGCGCATGCC CGTGGGGTCA CCCCTTCTGA GGGACAATGT CTGCTACTCA AGAACACCTT GGAAGCTGTA TCACTGACAG AGAGCAGTGC
MRPS18AP1 TCATGCCCAT CTACAAAAAA AGGCCTCCCC TGGAACAGGG CGTTCATGGC CTTGGGGTCA ACCCTCCTGA GGGACAATGT CTGCTACTCA AGGACACCTT GGAAGCTGTA TCACTCACAG ACAGAAGAGC
Consensus TCAaGCCCAT CTACAAAAAA .GGCCcCCgC TGGAACAGGG tGcgCATGcC CgTGGGGTCA cCCCTtCTGA GGGACAATGT CTGCTACTCA AGaACACCTT GGAAGCTGTA TCACTgAcag a.ag.ag.gc
651 780
MRPS18A_CD
MRPS18A_mR TTCCAGAGTT CCTCCTGCAC CTGTGCTGGG GAGTAGGAGG CCCACTCACA AGCCCTTGGC CACAACTATA CTCCTGTCCC ACCCCACCAC GATGGCCTGG TCCCTCCAAC ATGCATGGAC AGGGGACAGT
MRPS18AP1 TTCCAGAGTT CCTCCTGCAC CTGCGCTGTG GAGTAGGAGG CGTACTCACA AGCCCTGGGC CACAACTATA CTCCTGCCCC ACCCCACCAT GACGGCCTGG CCCCTCTGAC ATGTATGGAC AGGGGACAGT
Consensus ttccagagtt cctcctgcac ctg.gctg.g gagtaggagg c..actcaca agccct.ggc cacaactata ctcctg.ccc accccacca. ga.ggcctgg .ccctc..ac atg.atggac aggggacagt
781 910
MRPS18A_CD
MRPS18A_mR GGGACTAACT TCAGTACCCT TGGCCTGCAC AGTAGCAATG CTGGGAGCTA GAGGCAGGCA GGGCAGTTGG GTCCCTTGCC AGCTGCTATG GGGCTTAGGC CATGCTCAGT GCTGGGGACA GGAGTTTTGC
MRPS18AP1 GGGATGAACT TCAGTACCCT TGGCCTCCCC AGTAGCAATG CTGGGAGCTA GAGGCAGGCA GGGCAGTTGG GTCCCTTGGC AATTGCTGTG GGGCTTGGGC CATACTCAGT GCTGGGGACA GGAGTTTTGC
Consensus ggga..aact tcagtaccct tggcct.c.c agtagcaatg ctgggagcta gaggcaggca gggcagttgg gtcccttg.c a..tgct.tg gggctt.ggc cat.ctcagt gctggggaca ggagttttgc
911 1040
MRPS18A_CD
MRPS18A_mR CCAACGCAGT GTCATAAACT GGGTTCATGG GCTT----AC CCATTGGGTG TGCGCTCACT GCTTGGGAAG TGCAGGGGGT CCTGG----- -GCACATTGC CAGCTG---- --------GG TGCTGAGCAT
MRPS18AP1 CCAGTGGAAT GTCATAAACT AGGCTCATGG GCTTGAAAAA AAAAAGAAAA GAAAATCAAT CATTGTAATC CACCATGTTA ACAGGCTAAA GAAACAAAAT CATATGATCA TATCATTTGA TACAGAAAAT
Consensus cca..g.a.t gtcataaact .gg.tcatgg gctt....a. ..a..g.... .....tca.t ..ttg..a.. ..c...g... .c.gg..... ...aca.... ca..tg.... ........g. t.c.ga..at
1041 1121
MRPS18A_CD
MRPS18A_mR TGAGTCACTG ATCTCTTGTG ATGGGGCCAA TGAGTCAATT GAATTCATGG --GCCAAA-C AGGTCCCATC CTCTTCATG
MRPS18AP1 ACAAAACCCA ACATCTAGTG ATTATAAAAA TTCTTAGCTG CCAGGCGTGG TGGCTTGTGC CTGTAATCCC AACAGTTTGG G
Consensus ..a....c.. a..tct.gtg at......aa t...t...t. ..a..c.tgg ..gc.....c ..gt.....c ..c....tg. .