Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1081 Check: 0 ..
Name: MRPS18B_CDS Len: 1081 Check: 4370 Weight: 0.98
Name: MRPS18B_mRNA Len: 1081 Check: 6093 Weight: 0.57
Name: MRPS18BP2 Len: 1081 Check: 5199 Weight: 0.57
Name: MRPS18BP1 Len: 1081 Check: 4619 Weight: 1.87
Name: Consensus Len: 1081 Check: 7499 Weight: 0.00
//
1 130
MRPS18B_CD ATGGCGG CGTCTGTATT AAACACCGTG CTGAGGCGGC TTCCTATGCT ATCTCTCTTC
MRPS18B_mR GCCT TTCCGTCAAT TCCTGTCCTG GGCGTACGTC AAGATGGCGG CGTCTGTATT AAACACCGTG CTGAGGCGGC TTCCTATGCT ATCTCTCTTC
MRPS18BP2 ACAAAAT AATATATATA TATATATTTT TTTTTTCTCA ATAAGAACAC AACTTACCTG ATCTGGGTTT AAGATGGTGA TGCCCATATT AAACACC-TA CTAAGGCAGC TTCCTATCCT TTCTCTCTTC
MRPS18BP1 ATTTTTTTGT TATGGATCAT TAATGGATAT CCTATTCATA CCCTTTCAAA TGCTTTTATA TCTTTCACAC TATAAATTGC CTTATATGAT ATTC-CTACA CAAATGCATA TTTCCATCCC AATTCTATCT
Consensus .........t .at..at... ta.....t.t ..t.ttc..a ..c..tcaa. t.cttt..t. ...tt....c .a.AtggtG. cgtctaTatT AaaCaCc.ta CtaAgGCagc TTcCtATcCt atcTCTcTtc
131 260
MRPS18B_CD CGAGGTTCTC ACAGAGTTCA GGTTCCCCTC CAGACTCTTT GCACCAAAGC TCCCTCTGAG GAAGATTCTT TGTCCTCAGT TCCCATTTCT CCTTATAAGG ATGAGC--CC TGGAAATATC -TGGAATCAG
MRPS18B_mR CGAGGTTCTC ACAGAGTTCA GGTTCCCCTC CAGACTCTTT GCACCAAAGC TCCCTCTGAG GAAGATTCTT TGTCCTCAGT TCCCATTTCT CCTTATAAGG ATGAGC--CC TGGAAATATC -TGGAATCAG
MRPS18BP2 TGAAGTACAA ATGGAGTTCA GGTTCCCCTC CAGACTCTTT -CACCAAAGC TCCTTCTGAG AAAGATTCTT TGCCCCCAGT TCCCATTTCA CTATATGAGA ATGAAC--CC TGGAAATATC -TGGAATCAG
MRPS18BP1 GATTCTAATT TCTTATTAAG TAGACTGCTC TTGTATAATA CATTCTGATC TA-TTAGGAT TATATTCCAC TTTTCAGATG CTACAAACAT TCAGCAAGTA CTGTACTTCT TTTAATTGTC ATCAGGTTAT
Consensus .ga.gTact. ac.gAgTtca ggttCccCTC caGacTctTt .cacCaaAgC TcctTctGAg .AagaTtCtt TgtcC.cAgt tccCAtttct ccatataaga aTGaaC..Cc TggAAaTaTC .TggaaTcAg
261 390
MRPS18B_CD AAGAATACCA GGAGCGATAT GGTTCTCGC- CCCGTC--TG GGCTGACTAC CGCCGCAACC ACAAGGGTGG TGTACCCCCA --------CA GCGGACTCGG AAGACATGTA TTCGTCGGAA TAAAGTTGTT
MRPS18B_mR AAGAATACCA GGAGCGATAT GGTTCTCGC- CCCGTC--TG GGCTGACTAC CGCCGCAACC ACAAGGGTGG TGTACCCCCA --------CA GCGGACTCGG AAGACATGTA TTCGTCGGAA TAAAGTTGTT
MRPS18BP2 AAGAATACCA AGAACCATAG GGTTCTCAT- CCCAAC--TG GGTGGACTAT TGCCACTACT ACAAGGGTGA TATACCCCCA --------CA GCAGACTCAA AAGACATGTA TGCATAGGAA AACAGTCGCT
MRPS18BP1 AAGTCTTCCA ACTTCCAGTT TAAGCTTATG CCAGACAATC TTTTGGAATA TTCAGCACTG AAATTTATTT TTTTCTTTTA GGTTTTGGCT TTTGGCATGC TAAATTATTT TCCATCGTTG TTCTAGCCTT
Consensus AAGaaTaCCA aga.CcAtat ggttCTcat. CCcgaC..Tg ggttGacta. tgCcgCaac. AcAagggTg. T.TaCccccA ........Ca gc.GaCtcg. aAgAcatgTa T.CaTcGgaa tacagtcgtT
391 520
MRPS18B_CD GGGAATCCCT GCCCCATCTG TCGAGAT--- -CACAAGTTG CATGTTGACT TTAGG-AACG TGAAGCTCTT GGAGCAATTT GTCTGCGCCC ACACGGGTAT CATCTTCTAT GCTCCATACA CAGGAGTCTG
MRPS18B_mR GGGAATCCCT GCCCCATCTG TCGAGAT--- -CACAAGTTG CATGTTGACT TTAGG-AACG TGAAGCTCTT GGAGCAATTT GTCTGCGCCC ACACGGGTAT CATCTTCTAT GCTCCATACA CAGGAGTCTG
MRPS18BP2 GGGAATCCCT GCCCCATCTG CCAAGGT--- -CACAAGTTG CATGTTGACT TTAGG-AATG TTAAGCTCTT GGAACAGTTT GTCAGTGCCC ACACGGGTAT TATCTTCCAC GCTCCATACA CAGGAGTCTG
MRPS18BP1 CAGTGATTTT TCAAATTTTG TTAATGTTTT CAACAACCTT ATTGTGGGAT AAGGGTAACT TTAATCTAAT CTAGTAAATA TTTATTGAAA TAACAATGAG CCACAGCTGC ACGCTCT-CT AGAAAGTCTG
Consensus ggGaatcccT gCcccaTcTG tcaAggT... .cACAAgtTg caTGTtGacT ttaGG.AAcg TtAAgCTctT ggAgcAatTt gTcagtGccc acACgggtAt catCttCtac gCtCcaTaCa caggAGTCTG
521 650
MRPS18B_CD TGTGAAGCAG CACAAGCGGT TGACCCAGGC CATCCAGAAA GCCAGGGATC ATGGTCTCCT CATTTACCAC ATCCCCCAGG TTGAACCACG GGACCT-TGA CTTCAGTACC TCTCATGGGG CTGTGAGTGC
MRPS18B_mR TGTGAAGCAG CACAAGCGGT TGACCCAGGC CATCCAGAAA GCCAGGGATC ATGGTCTCCT CATTTACCAC ATCCCCCAGG TTGAACCACG GGACCT-TGA CTTCAGTACC TCTCATGGGG CTGTGAGTGC
MRPS18BP2 TATGAAGCAG CACAAGATGT TGACCCATGC CATCCAGAAA GCCAGGGATC ATGGTCTCCT CAGTTACCAC ATCTCCCAAG TTGAACCCCG GGACCT-TGA TTTTAGTGCC TCTCATGGAG CTATGAGTAC
MRPS18BP1 AAT--CTCAG CCCTAGGGGA ----CTTTTC CAAATATGAT CC-----TTC TTTGGGTGCT C---TGCCTT AGCACTAAGG ATGGTGACTT TCCCCTGTCT CTTCTATTCC TATATT---- CTTTAGAGTT
Consensus taTgaagCAG CaCaAG.gGt tgacCcatgC CAtccAgaAa gCcagggaTC aTgGtcTcCT Ca.tTaCCac AtC.CccAgG tTGaaccccg ggaCCT.Tga cTTcagT.CC TcTcaTgg.g CT.Tgagt.c
651 780
MRPS18B_CD TACTCCGCCA GCCCCCACCC TGGTCTCAAG TGACCCCTGG TACCCATGGT ACAACTGGAA ACAGCCACCG GAGAGAGAAC TGTCTCGCCT TCGCCGGCTT TACCAGGGTC ATCTCCAAGA AGAGAGTGGC
MRPS18B_mR TACTCCGCCA GCCCCCACCC TGGTCTCAAG TGACCCCTGG TACCCATGGT ACAACTGGAA ACAGCCACCG GAGAGAGAAC TGTCTCGCCT TCGCCGGCTT TACCAGGGTC ATCTCCAAGA AGAGAGTGGC
MRPS18BP2 TTCTCTGCCA GTCCCCACCC TCGTCTCAGG TGAACCCTGG TACCTATGGT ACAGCTGGAA ACAGCCATCA GAGAAAGAAC TGTCTCACCT TTGCCAGCTC TATCAGGATT ATCTCTAAGA AGAGAGTGGC
MRPS18BP1 TTCTGTACCA -CTTAGAAAG TAAAACCAGG CGACCTCTGG TACCCATGGT ACAACTGAAA ACAGCCACCA GAGAGAGAAC TGTCTCACCT TCCTCGGCTC TATCAGGGTC ATCTCTGATA AGACAGTGGC
Consensus TtCTctgCCA gcccccAccc T.gtctCAgG tGAcCcCTGG TACCcATGGT ACAaCTGgAA ACAGCCAcCa GAGAgAGAAC TGTCTCaCCT TcgcCgGCTc TAtCAGGgTc ATCTCtaAgA AGAgAGTGGC
781 910
MRPS18B_CD CCCC-CACCT GAGTCAATGC CCAAGATGCC CCCTAGAACA CCAGCGGAAG CCTCCTCCAC TGGGCAGACA GGCCCTCAGA GTGCTCTGTA G
MRPS18B_mR CCCC-CACCT GAGTCAATGC CCAAGATGCC CCCTAGAACA CCAGCGGAAG CCTCCTCCAC TGGGCAGACA GGCCCTCAGA GTGCTCTGTA GGAGCTGTAG ACTGGGAAGA GAGGCCAGGC GTGGTGGCTC
MRPS18BP2 CCCCGCACCT GAGTCAATGC CCAAGATGCT TCCCACAACA CCAGTGGAAG CCTCCTTCAC TGAAGAGACA GGCCCCTAGA GTGCTCTG-- -GAGTCATAG ACTGGGAAGA GAGGCTGGGC CCAGAGGCTT
MRPS18BP1 CCTC--ACCT GAGTCAGTGC CCAAGGTGCC CCCCACAACA CCAGCGGAGG CCTCCTCCAC TGAGCAGTCG GACCC-CAGA GTGCTCTGTA GGAGCTGTAG ACTGGGAAGA AGGGCCGGGT GTGGTGGCTC
Consensus CCcC.cACCT GAGTCAaTGC CCAAGaTGCc cCCcAcAACA CCAGcGGAaG CCTCCTcCAC TGagcAGaCa GgCCC.cAGA GTGCTCTGta ggagctgtag actgggaaga ..ggccggg. gtggtggctc
911 1040
MRPS18B_CD
MRPS18B_mR ACTCCTGTAA TCCCAGCACT TTGGGAAGCC AAGGTGGGCT GATCACTTGA TCCCAGGAGT TTGAGACCAG CCTGGGCACC ATGGTGAAAC CTCGTCTTTA CCAAAAAAAA AAAAAAAAA- ---AAAAAAA
MRPS18BP2 ATACCTGTAA TAAGAGCACC -----AGTCT GAGGTGGGCA GATTGCTTGA GCCCAGGAGT TCAAGACCAG CCTGGACAAC AAGGCAAAAC CCTGTCTCTA CCAAAAATTA CAAAAATTA- ---GCATGGT
MRPS18BP1 ATGGCTGTCA TCCCAACACT TTGGGAAGCT GAGGTGGGCG GATTGCTTGA GCCCAGGGGT TCAAGACCAA CCTAGGCAAA ATGGTGCAAC CCTATCTCTA CAAAAAATAC AAAAATTAGC CGGGCGTGGT
Consensus at..ctgt.a tccca.cact ttgggaagct gaggtgggc. gattgcttga gcccagg.gt tcaagacca. cct.ggcaa. atggtg.aac cct.tctcta c.aaaaata. aaaaa.ta.. ...gc.tggt
1041 1081
MRPS18B_CD
MRPS18B_mR AAAAAA
MRPS18BP2 GGCTTGTGCC TGTAGTCCCA GGTACTTGGG AGACTGAGGT G
MRPS18BP1 GGTGGGCACC TGTAGTCCCA GCTATTCT
Consensus gg...g..cc tgtagtccca g.ta.t.... .......... .