Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1195 Check: 0 ..
Name: MRPS18C_CDS Len: 1195 Check: 9199 Weight: 2.11
Name: MRPS18C_mRNA Len: 1195 Check: 9173 Weight: 0.46
Name: MRPS18CP4 Len: 1195 Check: 5890 Weight: 0.46
Name: MRPS18CP1 Len: 1195 Check: 9126 Weight: 0.71
Name: MRPS18CP6 Len: 1195 Check: 3561 Weight: 0.71
Name: MRPS18CP2 Len: 1195 Check: 7945 Weight: 1.09
Name: MRPS18CP3 Len: 1195 Check: 7868 Weight: 1.19
Name: MRPS18CP5 Len: 1195 Check: 7027 Weight: 1.27
Name: Consensus Len: 1195 Check: 794 Weight: 0.00
//
1 130
MRPS18C_CD ATG GCCG--CTGT
MRPS18C_mR AGCGG AAG--GGGCC TT----TCGG AACGATTTGG AACGAAAGGA AGTGGAAGAA ACGCGGA--A C-----CATG GCCG--CTGT
MRPS18CP4 CTGCACAAAA GCATCAAGTT TAAGACTTGG ATAACCTGTT TCGTGTGCAA GAGTCGGGAT ATGTAATCAG ATTGTTTATG GAATAGCTGA AGTTCTTGGC AAGCTGTGGA CTTCCTCATC TCCTACCTAA
MRPS18CP1 A TAAACTCGTT ACA--CATAA TTCAC----T TAAATTATGA AAATCACAAA CA----ACAA AGCTATTAAA TAGGAAAAGA AGAGAA-GAC AC-TGGT--G C-----CGTC AGTG--CTGA
MRPS18CP6 AAA CCTATGTGAT ACAG-CAAAA GCATC----T CAAAGAGGGA AGCTCGGCAA TA----AATG CCTACATAAA AGGTAGAACC AGTGGA-GGA ATGTGGA--A C-----CATG GCCA--CTAT
MRPS18CP2 TGAACGGGG TACTCGAG-- -CCCACAGGG G--------- --AAGAGCAG CGGAAGGGGC CT---TTCGG AACGATTTGG AACGAAAGGA AGTGGAAGAA ACGCGGA--A C-----CATG GCCG--CTGT
MRPS18CP3 CAAGG AGCTTGAAG- CCTCACTTGG GAAG------ -GAAGTGATC CTTTAAAAAC CA----GGTC CTGGATTTGG GATGAAAGGA AGTGGAAGAA ATGCGGA--A C-----CACG GCCG--CTAT
MRPS18CP5 ATACATGTCA CATCAGTGAA CC---TGCCC ACATCATTAT ACCTTGGTAC ATTAGATAGA AAGCTGTAAT CTA---CAAG ACCC--AAAT
Consensus ......... .......... .....c.... ..... . ..a...g... ........a. c. ..... ......tt.. ....a.a... agtgga.g.a a.gcgg.... c.. cAtg gCCg ctgt
131 260
MRPS18C_CD GGTTGCT--- -GTTTGCGGT GGT--CTAGG GAGGAAGAAG TTGA------ -------CAC ACTTGGTAAC GGCTG--CTG TC-AGCCTTA CACATCCCG- GGACTCACAC GG--TGCTTT GG-AGAAGAG
MRPS18C_mR GGTTGCT--G TT--TGCGGT GGT--CTAGG GAGGAAGAAG TTGA------ -------CAC ACTTGGTAAC GGCTG--CTG TC-AGCCTTA CACATCCCG- GGACTCACAC GG--TGCTTT GG-AGAAGAG
MRPS18CP4 CATTCCTAGG TTCCTGAGGT GGAGCCTTGA TTTAAAAGGG TTGCAACTTA GCCACCCCAC CCTAAATGAA ACCTATCATG TATAACATCA CATTACCTG- GAACAGGTTT GACTTGATTT AGTAAAACCG
MRPS18CP1 GGGAGCT--- TTTAGGGCAT GGA--GAGTG GAGTGTGAGA GCGA------ -------AGT ACCCTTAGCA TGC----CAG CT-ACCCCGA GCCATCTAGA AGAAACTTTT GT--ATCTGA AT-GAGAAAA
MRPS18CP6 AGTTGCT--- CTTTGCA-GT GGT--CTGGG GAGGAAGAAG TTGA------ -------CAC ACCTTGTAAT GGCTG--CTG TT-AGCCTTA CACATCCC-A GGACTCATAT GG--TGCTAT GG-AGAAGAG
MRPS18CP2 GGTTGCT--- -GTTTGCGGT GGT--CTAGG GAGGAAGAAG TTGA------ -------CAC ACTTGGTAAC GGCTG--CTG TC-AGCCTTA CACATCCCG- GGACTCACAC GG---GTAAA GTCTCCATAT
MRPS18CP3 GGTTGCT--- -GTTTGCGGT GGT--CTAGG GAGGAAGAAG TTGA------ -------CAC ACCTGGTAAC GGCTG--CTG TC-AGCCTTA CACATTCCG- GGACTCACAC GG--TGCTTT GG-AGAAGAG
MRPS18CP5 TGTTATT--- TTTTTCAAGA ------AAGG AAGATCCATA TTTG------ --------TT TTTGGGGGAA GAAAGGAACA AACTGCAGAA AAAGAACA-- AGGTTTACTA GGA-TGCTGA AGGATAATAT
Consensus gGTTgcT . .gtttgcgGt ggt ctaGG gAGgaagAag TTga cac acttggtaAc ggctg..ctg tc.agCcttA cAcatcCcg. gGactcacac Gg. tGcttt gg.agaAgAg
261 390
MRPS18C_CD GTTGTTCACA A-CAGGTA-- ------TCCA GCAATGAGGA CCTGCCCATT TCAATGGA-A AATCCTTATA AAGAACCT-- CTTAAGAAAT GTATCTTGTG TG-----GAA AGCATGTAGA TTATAAGAAT
MRPS18C_mR GTTGTTCACA A-CAGGTA-- ------TCCA GCAATGAGGA CCTGCCCATT TCAATGGA-A AATCCTTATA AAGAACCT-- CTTAAGAAAT GTATCTTGTG TG-----GAA AGCATGTAGA TTATAAGAAT
MRPS18CP4 AATATACAAA AACGTGTACT AAAAGGTCAA GAGATAGAGA AATAATGTTT CAGTTTGAGA AATAAACATT TTTTTAAC-- TTTAAATATT GACTTTTTTA TGAATAAGGA AGCTTTTTAT TTTACAGGTC
MRPS18CP1 ACAACTCAAA T-AATGCACT GCAC--TCCA GCCTGGGTGA CAAGGGCAAG ACTCTGTC-T CAAAC--AGA AAAAAGAA-- AAAAAGAATT GTATCTTGTG TG-----GAA AGCGTGTAGA TGATAAGAAT
MRPS18CP6 GTTGTTCACA A-TATAAACA GATA--TCCA GCAATGAGGA CCTGCCCATT CCAATGGA-A AATTCTTATA AAGAAGCC-- CTTAAGAAAT GTATCTTGTG TG-----GAA AGCAGGTAGA TTTTAAGAAT
MRPS18CP2 CCTATGCTCC A--TTGTAGC GC----TGCA GGCATTAACC TTAGTCCTAA TGGTTAGAGT CGTCCCTGTT AGCAAAACGA CTCTGGTTTC TAGGCGATTA AGTTTCTCCA AGATGGGTGG GAATCTGTAA
MRPS18CP3 GTTGTTCACA A-TATAAACA GGTA--TCCA GCAACGAGGA CCTG------ ---------- ---------- ---------- ---------- ---------- ---------- ---------- ----------
MRPS18CP5 TATATATTAT A-TATGTAAA ATTCA-TATG AATTATATCA TATATTTTGT ATGTATTTGA AATATATATT TAGATATATA CTATATTATA TAGGTTTTTG AGGCTTGTTT TGAGTGATGA ACTACTGTAC
Consensus gtTgTtcaca A .atgtA.. ..... Tcca gcaatgagga cctg.cc..t ....t.ga.a aat.c.tat. aagaa..... ct.aag.a.t g..tctt.tg tg.....g.a agc.tgt.ga t.at.ag.a.
391 520
MRPS18C_CD GTACAGCTTT TGTCCCAGTT TGTTTCTCCA TTTACTG-GA TGCATTTATG G-----AAGG CACATTACAG GTCTTTGTGG GAAGAAACAG AAAGAAATCA CAAAA-GCAA TTA-AGAGAG CTCAAATAAT
MRPS18C_mR GTACAGCTTT TGTCCCAGTT TGTTTCTCCA TTTACTG-GA TGCATTTATG G-----AAGG CACATTACAG GTCTTTGTGG GAAGAAACAG AAAGAAATCA CAAAA-GCAA TTA-AGAGAG CTCAAATAAT
MRPS18CP4 TTTGTGGGAA GAAACAAATC ACAAAAGCAA TTAAGAGAGC TCAAACAATG GGTAAGAAAG AGCACCTCAA CAACTGTATT GAGCTAGCTG AAATTTTGCT CATTATGCTT TGT-CAAGAA CTTTAATTAT
MRPS18CP1 GTACAGCTCT TGTCCCACTT TATTTCTCCA TTTACTG-GA GGCATTTATG G-----AAGG TACATTATAG GTCTTTGTGG GAAGAAACAG AAAGAAATCA CAGAA-GCAA TTA-AGAGAG CTCAAATAAT
MRPS18CP6 GTACAGC--- -GTCCCAGTT TATTTCTCCA TTTGTTG-GA TGCATTTGTG G-----AAGG CACAAAACAG GTCTTTGTGG GAAGAAACAG AAAGAAATCA CAAAA-GCAA TTA-AGAGAG CTCAAATAAT
MRPS18CP2 TT---GCCTT TGACTGTTTT AGTGTCGTCT AATCCA---C TCCTTTAAAG TATTTAAACG TATGAGGAAG TTGGAGTGGT TCTTAAAAAG CAGAGACTTT CCTAAGATCT CTG-GATAAT CTTAGTGAGG
MRPS18CP3 ---------- ---------- ---------- ---------- ---------- ---------- ---------- GTCTTTGTGG GAAGAAACAG AAAGAAATCA CGAAA-GCAA TTA-AGAGAG CTCAAATAAT
MRPS18CP5 CATCTGATTA GGCGNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNCGCCTA ATCAGATGGT
Consensus .t.c.gcttt tg.cc.a.tt ..t.tc.cca ttt.c.g.g. t.catt.atg g.....aa.g .aca....ag gtctttgtgg gaagaaacag aaagaaatca caaaa.gcaa tta.agagag cTcAaataat
521 650
MRPS18C_CD --------GG GGTTTATGCC AGTTACATAC A--AGGATCC TGCATATCTC -AAGGACCCT AAAGTTTGTA ACATCAGATA TCGGGAATAA
MRPS18C_mR --------GG GGTTTATGCC AGTTACATAC A--AGGATCC TGCATATCTC -AAGGACCCT AAAGTTTGTA ACATCAGATA TCGGGAATAA A-TTCTATCA CGTTACCACT AATAAACTTA TTTTACAGTA
MRPS18CP4 CTCTTTACAG GGTTTATGCC AGTTACATAC A--AGGATCC TGCATATTTC -AGGGACCCT AAAGTTTATA ACATCAGATA TCCGGAATAA A-TTCCATCA CATTACCACC AGTAAACTTA TTTTATAGTA
MRPS18CP1 --------GG GATTTATGCC AGTTACATAC A--AGGAT-C TGCATATCTC -AAGGACCCT AAAGTTTGTA ATATCAGATG TTGGGAATAA A-TTCTATCA CGTTACCACC AATAAACTTA TTTTACAGTT
MRPS18CP6 --------GG GGTTTCTGCC AGTTACATCC A--AGGATGC TGCATATCTC -AAGGACCCT AAAGTTTGTA ACATCAGATA TCAGGAGTAA A-TTATATCA TGTTACCACC GATAAACTTA TTTTACAGGT
MRPS18CP2 A-------AG GGACATTTCC AGAGTCGCCC AGCAGCAAAT TCCAGATGTC TAAGGTCCCC AAA------C AGAACAAAAT TGCATAATTT T-TGCAATTT TATCTTCTCN NNNNNNNNNN NNNNNNNNNN
MRPS18CP3 --------GG GGTTTATGTC AGTTACATAC A--AGGATCC TGCATATCTC -AAGGACCCT AAAGGTTGTA ACATCAGATA TCGGGAATAA A-TTCTATCA CCTTACTACT AATAAACTTA TTTTACAGTA
MRPS18CP5 ---------A CAGTAGTTCA TCATACATAC A--AGGATAC TGCATACCTC -AAAGACCCC AAAGTTTGTA ACATCAATTA TCAGGAATAA AATTATATAA GGTTACCACC AATAAACTTA TTTTACAGTT
Consensus . gg ggtttaTgcc agttaCataC A..AGgAtcc TgCAtAtcTC .AAgGaCCCt AAAgtttgta AcAtCAgata TcgggAATaa a.tt.tat.a ..ttaccac. aataaactta ttttacagt.
651 780
MRPS18C_CD
MRPS18C_mR AGTGGTTGTA TGATGCCAAT ACTGACT-CA AACCAACCTT TGGATAGAAA AGTGTTTGAG GAGTGAGGTA AAGA-ATGAC ACTTCCCCTT CATACCAAT- ---GTCCATT AAGCAGATTG CTTATTTAAA
MRPS18CP4 AGTGGTTGTA TGATGCCAAT ACTGACT-CA AACCAACCTT TGGATAGAAA AGTGTTTCAG GAGTGAGGTA AAGA-ATGAC ACTTCCCCTT CATACCAATC AGTGTTCATT AAGCAGATCG CTTATTTAAA
MRPS18CP1 AAAA-----A AAATTCAGAT GGGGTCTTGC TGTGTTGCCC AGGTTGATCT CAAACTCCTG GCCTTAAGCA ATCC-TCACA CCCAGGCCTC CCGAAGTGCT GGGAT----- -TACAGGTGT GAGCCATCAC
MRPS18CP6 AAAA-----A AAAAAGGTAG AAAGACTTCA AATAACCCAA TGACACACCT CAAGGAACTA GAA--AAGCA AGAA-CAAAG CCAATGCAAA ATAATTAGAA GGAAAAAATA ATAAACATTA GAGCAGAAAA
MRPS18CP2 NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNN-NNNNN CCTATTCTGT AATTTGCATT TATCTACTGT GCAATTTTCT TTTTCTTATA
MRPS18CP3 AAAAAAACAA AAAAACAAAA AAACCAGGTC TTCTGTAAAC AGAGTATGCT AAAACTGTAA AAGAAGGCTA CTGCGTTAAG TCTTTACATT TCGTACTCTA TTCTGCCACA TTCCAAAAAA AGGATTTCAC
MRPS18CP5 AAAA---CAA AAGTTTTTCT CTTTTTTATC TCTGAATTGT TTATTTAAAG ACAATTTCAA TAGAAATATT TGATTTGGGG GAACTTCTAA CCACTAAACA AATAGCAATT ATCCTAGTAT TGGATCATCT
Consensus a........a .......... .......... .......... ....t..... .....t.... .a........ .......... .c..t.c... .......... .......a.. ...c...t.. ..........
781 910
MRPS18C_CD
MRPS18C_mR ATGTTAACAC TCAT--CACA TTTTATCTAT GTTGAATAAA AGTGGTTCT- GTGTGATTGT CATTTATATC TGATCCCCAA ATAGCTCATA CAAT-----A ATCCATTCAA TAGAATGGAA TTAAAACTGT
MRPS18CP4 ATGTTAACAC TCAT--CACA TTTTACATAT GTTGAATGAA AGTGGTTCT- GGGTGATAGT CATTTATATC TGGTCCACAA ATAGCTCATA CAATGTAGTA CACCATTCAA CTGAATGGAG TTAAAACTGC
MRPS18CP1 GCCCAGCCTC AAAT--TTCA TTTATTTTCT TTCTTTTTTT TTTGAGACG- GAGTTTTGCT CTTGTCG-CC CAAGCTAGAG TGCAATGGTG CGAT------ CTCGGCTCAC TGCAACCTCT ACCTCCCGGG
MRPS18CP6 AAATTAAATT GAAA--CCAA AGAAAACCAT ATAAAAGATC ATTGTTGTT- TCGTTTTGCT -TTGTGT-TT TAGTTTAAAG AGAGTTTATT CAAG------ CACAAAGATT T---AGCACT GTAACCCAGG
MRPS18CP2 TATTTGAAAT GCATAGCAGA TCTTTTATCA TCTGATTTTT TAAGTTTCT- AAATGGTATT ATTTGATAAG CAGAAGTTTT AAATATAGTT GGAT----TT ATCAATCCTT TG--ATTTGT GCTGCATATT
MRPS18CP3 GCCATCAGGA GGCATGTTCC A-TAATCAAA GAAAATGTAA CTATTTGCC- TTTTGAAAAT TATGATGATA TGATTTTATA TATGCTGGCT TGCT----AA CACCACCAGA ATTAGTTTTA GTTTCTTAAT
MRPS18CP5 TTGTCTCCTA TCACTATCAT TTTCTTTCCT ATTGCTTTCA TTTTTATCTC TTTTCTTAGA CATGGTTTAA ACATTAATCA CGTTTTAACT TACT-----T AACACTTGTA ACAAGCCTGA GTTAAGTGCT
Consensus .......... ..a....... ..t..t.... .....t.t.. ....t..c.. ...t..ta.t ..t....... ...t...... .....t...t ...t .. ..c....... ...a...t.. gt.......t
911 1040
MRPS18C_CD
MRPS18C_mR TCAGAATGAT TTTCCAACTA GCAAATATAA GTATGCCTGG -TTAAGATAT CTTCCCTTTG TAGAAATGTT ACATTGGGAT GGAT----AG TGGTGCTGTC ACAGAAGGAC AAAATATTCC TAGACGAGTC
MRPS18CP4 TCAGAATGGT TTTCTAACTA GCAAATGTAA GTATGCCTGG -TTAAGAGAT CTTCCCTTTG TAGGAATGTT ACACTGGGAT GCAT----AG TGATGCTGTC ACAGCAGGAC AAAACATTCC TAGACAACTC
MRPS18CP1 TTCAAGTGAT TCTCCTGCCT CAGCCTCCCA AGTAGCTGGG ATTACAGGTG CAAACCATCA TGCTTGGCTA ATTTCTGTAT -TTTTAGTAG AGATGGGGTT TCACCATTTT GGCCA--GGC TGGTCTCAAA
MRPS18CP6 ---ACGTGCT TC-CAAGTTG TCTTGGGGAG TGCTCCAGAG AACAAACGAG AGACTCAAGT TTTTAAAGAA AACAAAGGAT GAATCAGGAG AGTTGGTGAT TACCAAAGTT ATTCATCAGC AATTCTCATT
MRPS18CP2 TTAGA---AA TCTCCTCCTA CCATGGGTTC ATAAACACAT TCTCTATTTT CTTGTAAAAA TTTTAAATTT TGTTTTCACA TTTA----AG TTTCTATAAT CTACCTGGAA TTTATATTTG TGTTAGGTAT
MRPS18CP3 TTGTCTGAAT TATGGTACAG CATAATG--- ---AGCTAGT TTTTTGTTTG TTTGTACTAT GATGTATATC ATCTAAGAAA GAAT-----G TCTCAACTAC TATTCAAACT CATTTATTCC ACTTCCAGGA
MRPS18CP5 --ATCATTAT TCTCATTGTT TTGGTCGGGA CGAAATGAAA TATATTCAAG CTAGGTAATT TAAGGAGCTA TTTAATAAAA G--------G AGCATCTAAA AGGTATGGAC AGAATGTAGG ATAACCCCAG
Consensus ........at t.tc.t.... ......g... ...a.c.... ..t....... .t........ t....a..t. ........a. g........g ........a. .......... ....t.t... ....c.....
1041 1170
MRPS18C_CD
MRPS18C_mR --TATCCTCA AACCAGTAGT GTCTTTTACA TGAAGAGATG ATT-TACACC TAATA----- GACATTGAAT ATGATAGACA TACATGTATA TATGTATCAG TTCTGAGTTC CACTGGCCTA TCCC
MRPS18CP4 --TATCCTCA AACCAGTAGT GTCTTTTACA TAAAAAGATG ATT-TACACC TAATA----- GACAGTGAAT GTGATAGACA TGTATGTATA TATGTATCAG TTCTGAGTTC CACCAGCCTA TCCCAAA-CA
MRPS18CP1 ---TTCCTGA CCTCAGATGA TTCACCCACC TCGGCCTCTC AAAGTGCCGG GATTACAGGC ATAAGCCACT GCGCCTGGCC CTCAAGTTTC TTAAGATGAA AACTATCTTT TGTTTCTATT CCCCAGA-AG
MRPS18CP6 GGTTTACAAA ATGACATTGG TATTAACCAA TTGTCTATCC ATTGTTCAAC GATAGT--GT GTATGGCATT GTATGGCTAC TTGCTGTCAG TTAGTCTAAA GCCTACATAG CAGGCGACTT CAAGAGGTAA
MRPS18CP2 TGCTACCTAT TGTGAGGTAG GAATCCAAAC ATTTTTTCCC TATGTAGACA ACCT------ -------ATT GTTCAAGCAT GATTTGTCAA AGGGTCCCCA CTCTACCTCA CCCTTCAC-- -CACCAATCT
MRPS18CP3 ATTCCTCCTA AAGAAATATT TCAAAAGAGA AAAAATGCAA ACCATGCAGA GATGTT---T ATAACCAACT TTATTTATGA TAGCAAAAAG CAAGGATGAG TAACAAGTAG ATAATGGTTA AACAAACTAT
MRPS18CP5 GGGACAGCAA AGTGCTCTGG GTTTCACAAC ATTTAGGTAC TGTTATCATC TTTA------ -------GGC CTGAAAGAAT AGAAAGGATG TAAATACTAC ATCCA--TAA CATAGAGTGA ACTATTGTGG
Consensus ......c..a a......... .......a.. .......... ....t.ca.. ...... .. .......a.t .t........ .....g.... .....a..a. ..c.a..t.. .......... .......t..
1171 1195
MRPS18C_CD
MRPS18C_mR
MRPS18CP4 CACTGGATTA CCA
MRPS18CP1 CTATGGATCT TTGTGGGCCT TG
MRPS18CP6 TTATTTCACT CAAGGGGGAG T
MRPS18CP2 GTAATGCTGT CTCTG
MRPS18CP3 GACAGCAACT CAG
MRPS18CP5 TAAGGGCTCT GTTTGGGGAT ATGAC
Consensus .........t .......... .....