Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 564 Check: 0 ..
Name: MRPS21_CDS Len: 564 Check: 7641 Weight: 1.92
Name: MRPS21_mRNA Len: 564 Check: 3256 Weight: 0.87
Name: MRPS21P1 Len: 564 Check: 8374 Weight: 0.72
Name: MRPS21P2 Len: 564 Check: 9602 Weight: 0.65
Name: MRPS21P6 Len: 564 Check: 2075 Weight: 0.65
Name: MRPS21P5 Len: 564 Check: 8506 Weight: 0.96
Name: MRPS21P3 Len: 564 Check: 3919 Weight: 1.03
Name: MRPS21P7 Len: 564 Check: 6284 Weight: 0.72
Name: MRPS21P8 Len: 564 Check: 7470 Weight: 0.72
Name: MRPS21P4 Len: 564 Check: 9432 Weight: 1.36
Name: MRPS21P9 Len: 564 Check: 4389 Weight: 1.41
Name: Consensus Len: 564 Check: 1021 Weight: 0.00
//
1 130
MRPS21_CDS AT GGCAA-AACA TCTGAAGTTC ATCGCCAGGA
MRPS21_mRN TTCCG G-TGGGCTAG GTACTGAGCG CGCGAGGCTC TACAGAGTGA AGGTTTAAAT CCAAGGTCAT GGCAA-AACA TCTGAAGTTC ATCGCCAGGA
MRPS21P1 GTTACCCC CACAAAAGAG GAAAGAGGAG AAGCCTTCGG G-TCAGCTAG GTACTGAATG CACCAGGTCC TGCAGAGCGG AGAGTTAAAT CCAAGGTCAT GGCAA-AACA TCTGAAGTTC ATCGCCAGGA
MRPS21P2 CATATTT CTAAAGCAAC TTTAAATCCT CCATAGCCGG GGTTGACTAG GTACTGAGCG TGCCAGGCTC TGCAGAGTGG AGACTTAAAT CCAAGGTCAT GGCAA-AACA TCTGAAATTC ACCGCCAGGA
MRPS21P6 CAGAATT AGCTTTATGG TCAAAAGCTC CTGAAATCGG GGTCTGCTGG GTACTGAGCG CGTCAGGCTC TACAGAGTGA AGACTTAAAT CCAAGGTCAT GGCCA-GACA TCTGGAGTTC ATCGCCAGGA
MRPS21P5 AGGAGCCAT GACCTCTAAA TGTGCAGAAT AGG-CTTCAG GTTCA-CTGG ATACTGAGTG CATGGGGCCC TGCAGAGTGT AGACTTAAAT CCAAGGTCAT GGTAA-AACA TCTGAAGTTC ATTGCCAGGA
MRPS21P3 TGGCATCCTG TGGTGCCTCC TTGCCATCCC TGCCCTTTC- --CATGCCTG GCAACGGGTC TTTGTGGCTC TGCAGAATGG AGATTTAAAC CCAAGTTCAT GGCAA-AACA TCTGAAGTTC ATCACCAGGA
MRPS21P7 AGGTTCAA GCGATTCTAT GATTCAGCCT TAAAAAAGAA GGCGGGCTGG G-ACTGAGCT CATGAGGGCC TGCAGAGTGG AGACTTAAAT CCAAGGTCAG GGCAA-AACA TCTGGAGTTC ATTGCCAGGA
MRPS21P8 AGACACAC AATGGACTAT GATTCAGCCT TAAAAAAGAA GGCGGGCTGG G-ACTGAGCT CATGAGGGCC TGCAGAGTGG AGACTTAAAT CCAAGGTCAG GGCAA-AACA TCTGGAGTTC ATTGCCAGGA
MRPS21P4 AATGAAAC ACTACAAAAG AACATATCAC AATAGATTTG TTCCTCAAAT TATTTATTTA TTTTTATTTT TGAAATGGAG TCTTGCTC-T GTCGC-CCAG GCTGGAGTGC AATGGCATGA
MRPS21P9 ATCCATCCC TACAATGGAA TCTATTATTT GGATTACAGA GGTCAAATGG GTATGGAA-- CATCAGGTTT GGCAGAGTGG AGACTTAGAT CCAAGCTCAT GGATTTAAAA CCTGAAGTTC ATTGCCAGGA
Consensus ......c.. ........a. ..t..a.... ......t... g.t...ct.g gtactgag.. cat.agg.tc tgcagagtg. aga.ttaaat ccaag.tcat Ggcaa.aaca tCTGaAGTtC AtcGcCAgGA
131 260
MRPS21_CDS CTGTGATGGT ACAGGAAGGG AACGTGGAAA GCGCATACAG GACCCTAAAC AGAATCCTCA CTATGGATGG GCTCATTGAG GACATTAAGC ATCGGCG--- ---------G TATTATGAGA AGCCATGCCG
MRPS21_mRN CTGTGATGGT ACAGGAAGGG AACGTGGAAA GCGCATACAG GACCCTAAAC AGAATCCTCA CTATGGATGG GCTCATTGAG GACATTAAGC ATCGGCG--- ---------G TATTATGAGA AGCCATGCCG
MRPS21P1 CTGTGATGGT ACAGGAAGGG AACATGGAAG GTGCATACAG GACCCTAAGC AGAATCCTCA CTACGGATAG GCTGATTGAG GGCATTAAGC CTCAACG--- ---------G TACTGTGAGA AGCCATGCCA
MRPS21P2 CTGAGATGGT ACAGGAAGGA AACGTGGAAG GTGCATACAG GACCCTAAAC AGAATCCTCA CTGTGGATGG GCTCCTTGAG GACATTAAAT GTCCATG--- ---------G TATAATGAAA AGCCATGCCG
MRPS21P6 CTGTGATGGC ACAGGAAGGG AATGTGGAAA GCGCACACAG GACCCTAAAC AGAATCCTAA CTATGGATGG GCTCATTGAG GACATTAGGC GTCGGCG--- ---------G TATTGTGAGA AGCCATGCCA
MRPS21P5 CTATGATGGT ACAGGAAGGG C-CGTGGAGG G----TACAG GACCCTCAAA GGAATCCTCA CTGTAGATGG ACTCATTGAG GACATTAAGC ATCGGGGATA CCATCAGGGG TACGATGAGA AGCCATGCCG
MRPS21P3 CTGTGATGGT ATAGGAAGGG AACGTGGAAG GTGCATAGAG GACCCTAAAC AGAATCCTCA CTACGGATGG GCTCACTGAG GACATTAAGC TTCGGCG--- ---------G TATTATGAGA AGCCATGCGG
MRPS21P7 CTGTGATGTT ACAGAAAAGG ACCGTGAAAG GTGCGTGTGG GACCCAACAC AGAATCGTGG CCATGAATGG GCTCGCTGAG GACATTCGAC ATCAGCG--- ---------G TGCCATGAGA AGCCATGCCA
MRPS21P8 CTGTGATGTT ACAGAAAAGG ACCGTGAAAG GTGCGTGCGG GACCCAACAC AGAATCGTGG CCATGAATGG GCTCGCTGAG GACATTCGAC ATCAGCG--- ---------G TGCCATGAGA AGCCATGCCA
MRPS21P4 TCTCGGCTCA CTGCAACCTC TGCCTCCTGG GTTCAAGCGA TTCTCCTGCC TCAGCCTCCC GTGCAGCTGG GATTACAGGC GTCCACCACC ATGCCTGG-- CTAATTTTTG TACTGTGAGA AGCCATGCCA
MRPS21P9 GTATGATGGC ACAGGAAGGG AATGTGGAAG GCACATACAG GACCCTAAAG AGAGTCCTCA CCGTGGATGA ACTCATTAAG GACATTAAGC ATTGGTA--- ---------G TACTATGAGA AGCTATGCTG
Consensus ctgtGatggt acaggAaggg aacgTggaag G.gCatacag gaCcCtaaac agAatCctca ctatggaTGg gcTcattgag GaCattaagC aTcggcg. .........G TactaTGAGA AGCcATGCcg
261 390
MRPS21_CDS CCGGCGACAG AGGGAAAGCT ATGAAAGGTG CCGGCGGATC TACAACATGG AAATGGCTCG CAAGATCAAC TTCTTGATGC GAAAGAATCG GGCAGATCCG TGGCAGGGCT GCTGA
MRPS21_mRN CCGGCGACAG AGGGAAAGCT ATGAAAGGTG CCGGCGGATC TACAACATGG AAATGGCTCG CAAGATCAAC TTCTTGATGC GAAAGAATCG GGCAGATCCG TGGCAGGGCT GCTGAGGC-- ----------
MRPS21P1 CCGGCGACAG AGGGAAAGCT ATGAAAGGTG ATGGCGGATC TACGGCATGG AAATGGCTCG CAAGATCAAC TA-TTGATGC ACAAGAATTG GGCAGATCTG TG-CAGGGCT GCTGAGGC-- ----------
MRPS21P2 CCAGCGACAG AGGAAAAGCT ATAAAAGGTG CTGGCAGATC TATAACATGG AAATGGCTCG CAAGATCAAC TTCTTGATGC AAAAGAACTG GGTAGATCCG TGGCAGGGCT GCTGAGGC-- ----------
MRPS21P6 CCGGCTGCAG AGGGAAAGCT ATGAGAGGTG CCGGCTGATC TATAGCACGG AAATGGCTCG CAATATCAAC TTCTTGATGT AAAAGAATTG GGCAGATCTC TGGCAGGGCT GCTGAGGC-- ----------
MRPS21P5 CTGTTGACAG CAGGAAAGCT ATGAAACCTG CCGGCAGTCC TACAGCAAG- AAATGACTCG CAAGATCAGA TTCCTGATGC AAAAGAATTG GACAGACCTG CGTCAGGACT GCTGAAGC-- ----------
MRPS21P3 CCGGCGACAG AGGGAAAGCT ATGAAAAGTG CCGGCGGATC TACAGTATGG AAATGGCTCA CAAGATCAAC TTCTTGATGC GAAAGAATCA GGCAGATCCG TGGCGGGGCT GCTGAGGCGG GCAGATCCGT
MRPS21P7 CCAGCAACAG -GGGAAAGCT ACGGAACCTG CCGGCAGATC TACAGCATGG AGATGGCTCC AAAGATCAAC CTCTTGGTGG AAAAGAACTG GCTGGATC-- -GGCGGAGCT GCTGAGCC-- ----------
MRPS21P8 CCAGCAACAG -GGGAAAGCT ACGGAACCTG CTGGCAGATC TACAGCATGG AGATGGCTCC AAGGATCAAC CTCTTGGTGG AAAAGAACTG TCTGGATC-- -GGCGGGGCT GCTGAGCC-- ----------
MRPS21P4 CCAGGAACAA AGGGAAATCT ATGAAACCTG CTGGCAGATC TACAACATGG AAATGGCTAG CAAGATCAAC TTCTTGATGT AAAAGAATCA GGCAGAACCG AGGCAGGAAT GCTGAGGC-- ----------
MRPS21P9 ACAGTGACAG CAGGAGAGTT CTGAAACCTG CCAGCAAATC CACAAAATGG AAATGGCTCG CAGGATCACT TTTTTTTTTT TTTTTGAGAC AAAGTATC-- --ACTCTATC TCCCAGGC-- ----------
Consensus cCgGcgACAg agGGAaAgcT atGaAA.gTG CcgGCagATC tAcAacAtGG AaATGGCTcg cAaGATCAac tTcTTgaTgc aaaagaAt.g ggcagAtCcg tggCagggct gCtgAggc
391 520
MRPS21_CDS
MRPS21_mRN ---------- -------CTG TGGGTGGGAC ACCCAGTGCG AAACC-CTCA TCCAGTTT-T CTCTCCATCT CTTTTCTTTG TACAATCCCA TTTCCTATTA CCAT-TCTCT -GCAATAAAC TCAAATCACA
MRPS21P1 ---------- -------CTG TGGATGCAAC ACCCAGTATG AAACC-CTCA TCCAGTTT-T GTCTC----T TTTTTCTTTC TACAATCCCA TTTCCTATTA CCGT-TCTCT -ACAATAAAC TCAA-TTACA
MRPS21P2 ---------- -------CTG TGGATGGGAC ACCCAGTATG AAACC-CTCA TCCAAATT-T GTCTCCATCT CTTTTCTTTC TACAATCCCA TTTCCTATTA CCGT-TCTCT -ACAATAAAC TCAA-TCACA
MRPS21P6 ---------- -------CTG TGGATGGGAC ACCCAGTGTG AAACC-CTCA TCCAGTCG-T GTCTCCATCT CGTTTCTTTG AACAATCCCA TTTCCTATTA CTGA-TCTCT -GCGATAAAC TCAA-TCCCA
MRPS21P5 ---------- -------CTT TGGATAGGAC TCCCAGCATG AAAAC-CTTG TCCAGTTTAT GTCTCCACCT GTTTTCTTTC TACAACTCTA TTTTCTAGTA CCTT-TCTCT -ACAATAAAC TCAA-TCACT
MRPS21P3 GGGTGGGCTG CTGAGGCTTG TGGATGGGAC ACCCAGTATG AAACC-CTCA TCCAGTTT-T GTCTCCATCT CTTTTTTTTA TACAATCCCA TTTCCTATTA CAGT-TCT-- -GCAATAAAC TCAGTAAACT
MRPS21P7 ---------- --------TG TGGATACGAC ACCCACCACT TTTTT-CTTT TC---TTTTT TTTTTCTTTT TTGAGGTAGA GTCTTACTCT GCCCCCCTGG CTAG-AGTGT AGCGGCAAGA TCTCAGCCCA
MRPS21P8 ---------- --------TG TGGATACGAC ACCCACCTCT TTTTT-CTTT TC---TTTTT TTTT-CTTTT TTGAGATAGA GTCTTACTCT GTCCCCCAGG CTGG-AGTGT AGTGGCACGA TCTCGGCCCA
MRPS21P4 ---------- -------CTG CGGATAAGAC ATCCAGTATG AAAACACCCA ACCAGTTTTT GTCTCTATCT CTTTTCTTTC AACAACCCTA TTTTCTATTA CTAT-TCTCT --AAAATAAA TCAA---TCA
MRPS21P9 ---------- ---------- TGGAGTGCAG TGGCATGATC TTGGCTCACT GC-AGCCTCT GCCTCC---T GGGTTCAAGC GACTCTCCCA CCTCAGCCTC CTGAGTAGCT GGGATTACAA GTGTGTGCCA
Consensus .tg tggat.ggac acccag.atg aaa.c.ctc. tccagttt.t gtctccatct .ttttcttt. .acaa.ccca tttcctatta c..t.tctct ..caataaa. tca.....ca
521 564
MRPS21_CDS
MRPS21_mRN TGTCAAAAA
MRPS21P1 TGTCTGCAAG AAGGCCTCCA CATGTAGAAA CCATCCCATT A
MRPS21P2 TGTTTGCAAG AAGGACTCCA CATATAGAAA CAATCCC
MRPS21P6 TGTTGGCAAG AAGGCCTCCA CATATAGAAA CAATCCC
MRPS21P5 TATATGCAAG AAGGCCTGCA CATAGAGAAT -GATCCC
MRPS21P3 CAAAATAAA
MRPS21P7 CTGCAACCT- -CTGTCTCCA GGGTTCAACC GCCTCAGCCT CCC
MRPS21P8 CTACAACCT- -CCGTCTCCC AGGTTCAAGC AATTCTCCTG CCTC
MRPS21P4 CGTTTCCAAG AAGGCCTCCA CATATAAAAA CAATCCTA
MRPS21P9 CCACACCTGG CTAATTTTTG TATTTTTTGG TAGAGATGGG GT
Consensus ......caag ...g.ct.c. .at.t..a.. ...tc..... ...