Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1297 Check: 0 ..
Name: MRPS23_CDS Len: 1297 Check: 1681 Weight: 1.08
Name: MRPS23_mRNA Len: 1297 Check: 936 Weight: 0.96
Name: MRPS23P1 Len: 1297 Check: 1284 Weight: 0.96
Name: Consensus Len: 1297 Check: 2425 Weight: 0.00
//
1 130
MRPS23_CDS
MRPS23_mRN
MRPS23P1 GGAGCATCTG GAGAATCTAG GAGGAGCACC CTTGAGGACC ACTCAGGAAG CACTCAAGAG GAACATCTAC AGCTGGCTGG AAATCGCAGG GAGCATCTTT TTGCAGACTC AGTATGTGAT TTGAGCAGGA
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
131 260
MRPS23_CDS
MRPS23_mRN
MRPS23P1 GTGCTGTAGG AGAAATTGAA GGAGAAACCT CTCTAGCATC ACATACATAA CACCTTTCCC CTGTGGAAGG AGCCAGTCTT CCAGAGGCCC CACTTATGAT ATGGCAAAGC CAAAATTCTC ATGGAGGACA
Consensus .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... .......... ..........
261 390
MRPS23_CDS ATG GCAGGCAGCC GGCT---GGA AACCGTAG-- ----------
MRPS23_mRN TAGTCA CGCTCGGTA- --CCAGGC-G CAGATCA-TG GCAGGCAGCC GGCT---GGA AACCGTAG-- ----------
MRPS23P1 TCTGGTATCA TGAGGATCCC ATTGGAGCAA AATTCTTTTT TTTTTTTTTA GATGAAGTTT TGCTCTTTTT GCCCAGGCTG GAGTACAATG GCATGATCTC GGCTCACTGC AACCTTCGCC TCCTGATTTC
Consensus .......... .......... .......... .......... .......... .....agt.. .gctc..t.. ..ccaggc.g .ag..caaTG GCAgGcagcC GGCT...gGa AACCgTaG.. ..........
391 520
MRPS23_CDS -GGAGCATCT TCT--CTCGG ACTC---GGG ACCTGGTTCG GGCCGGGGTG CTGAAGGAGA AGC-CCCTGT GGTTTGACGT ATAT------ --GACGC--C TTTCCCCCGC TGAGGGAGCC CGTCT---TC
MRPS23_mRN -GGAGCATCT TCT--CTCGG ACTC---GGG ACCTGGTTCG GGCCGGGGTG CTGAAGGAGA AGC-CCCTGT GGTTTGACGT ATAT------ --GACGC--C TTTCCCCCGC TGAGGGAGCC CGTCT---TC
MRPS23P1 AAGTGATTCT CCTGCCTCAG CCTCCCGAGT AGCTGGGATT ACACCAGCTA CTTACGCCAC CACACCCAGC TAATTTTTGT ATTTTAAGTA GAGACGGGGT TTTGTCATGT TGGCCAGGCT GGTCTCGAAC
Consensus .gGaGcaTCT tCT..CTCgG aCTC...gGg AcCTGGttcg ggcCggGgTg CTgAaGgaga agC.CCCtGt ggtTTgacGT ATaT...... ..GACGc..c TTTccCccGc TGagggaGCc cGTCT...tC
521 650
MRPS23_CDS CAAAGGCCTC GAGTG--CGA TATGGCAAAG CC------AA AGCTCCCATC CAAGACATCT GGTACCACGA GGATCGGATT AGAGCGAAGT TTTATTCAGT GTATGGGTCT GGTCAAAGAG CTTTTGATCT
MRPS23_mRN CAAAGGCCTC GAGTG--CGA TATGGCAAAG CC------AA AGCTCCCATC CAAGACATCT GGTACCACGA GGATCGGATT AGAGCGAAGT TTTATTCAGT GTATGGGTCT GGTCAAAGAG CTTTTGATCT
MRPS23P1 TCCTGACCTC CGGTGATCCA CCTGCCCTGG CCTCCCAAAG AGCTGGGATT ACAGGCATAA GCCATCGCGC CCAGCCCATT GGAGCAAAAT TCTATTCAGC CTACAAATCT GGTCAAA-AG CTTTTGATCT
Consensus caaaGgCCTC gaGTG..CgA taTGgCaaaG CC......Aa AGCTcccATc caAGaCATct GgtAcCaCGa ggAtCggATT aGAGCgAAgT TtTATTCAGt gTAtgggTCT GGTCAAAgAG CTTTTGATCT
651 780
MRPS23_CDS ATTCAATCCA AACTTCAAGT CTACCTGTCA ACGGTTTGTG GAGAAGTACA CTGAGCTACA GAAACTTGGA GAAACAGATG AAGAGAAGTT ATTTGTGGAA ACAGGGAAGG CTTTATTGGC AGAAGGTGTC
MRPS23_mRN ATTCAATCCA AACTTCAAGT CTACCTGTCA ACGGTTTGTG GAGAAGTACA CTGAGCTACA GAAACTTGGA GAAACAGATG AAGAGAAGTT ATTTGTGGAA ACAGGGAAGG CTTTATTGGC AGAAGGTGTC
MRPS23P1 GTTCAATCCA AGCTTCAAGC CTACCTGTCA ATGCTTTGTG ---AAGTATA TTGAGCTGCA GAAACTTAAA GAAACAGATG AAGAGAAGTT ATTTGTAGAA ACAAGGAAAG CTTTATTGGC AGAAAGTGTC
Consensus aTTCAATCCA AaCTTCAAGt CTACCTGTCA AcGgTTTGTG gagAAGTAcA cTGAGCTaCA GAAACTTggA GAAACAGATG AAGAGAAGTT ATTTGTgGAA ACAgGGAAgG CTTTATTGGC AGAAgGTGTC
781 910
MRPS23_CDS ATTTTAAGAC GAGTAGGCGA AGCAAGGACT CAACACGGAG GTAGTCACGT TTCCCGGAAA TCCGAACACT TGAGTGTCAG ACCACAGACT GCGTTGGAAG AAAACGAGAC TCAGAAAGAA ----GTTCCA
MRPS23_mRN ATTTTAAGAC GAGTAGGCGA AGCAAGGACT CAACACGGAG GTAGTCACGT TTCCCGGAAA TCCGAACACT TGAGTGTCAG ACCACAGACT GCGTTGGAAG AAAACGAGAC TCAGAAAGAA ----GTTCCA
MRPS23P1 ATTTTAAGAT GCGTAGGAGA AACAAGGACT CAACAGGAAG GTAGTCACGT TTCCTGGAAA TCTGAACACA TGATTGTCAG ACCCCAAACT GTGTTGAAAG AAAACCAGCC TCAGAAAGAA AGAAGTTCCA
Consensus ATTTTAAGAc GaGTAGGcGA AgCAAGGACT CAACAcGgAG GTAGTCACGT TTCCcGGAAA TCcGAACACt TGAgTGTCAG ACCaCAgACT GcGTTGgAAG AAAACgAGaC TCAGAAAGAA ....GTTCCA
911 1040
MRPS23_CDS CAGGACCAGC ATTTGGAGGC ACCTGCAGAC CAGTCGAAAG GTCTCTTGCC TCCCTGA
MRPS23_mRN CAGGACCAGC ATTTGGAGGC ACCTGCAGAC CAGTCGAAAG GTCTCTTGCC TCCCTGAAGG ACCTGTATAC TGTGTATGCT GGCATTCACA CTCTACTCAC TGGCTGAATG TTGAGCTATT TTTAAACAGT
MRPS23P1 CAGGACCAGC ATTTGGAAGC ACCTGAAGGA CAGTTAAAAG GTCTTGCAGC TCCGTGAAGG GTTTGTATAT TGTGGATACT GACATACACA CTCTACTCAC TAGCTCAATG TTGAGCTGTT TCTAA-CAGT
Consensus CAGGACCAGC ATTTGGAgGC ACCTGcAGac CAGTcgAAAG GTCTcttgcC TCCcTGAagg ...tgtata. tgtg.at.ct g.cat.caca ctctactcac t.gct.aatg ttgagct.tt t.taa.cagt
1041 1170
MRPS23_CDS
MRPS23_mRN TGAACTGTGT AAATGTTTCT TGATCTCTAA GGTATTATGT TTGCCTTCTC TTAGT---TA TTTCTGGGTT GTCACAAAGC TCAGTATCAT GGTTTGACAG AAGCAGTTAT GT------GA ACTTTTATGT
MRPS23P1 TGAACTACAT AAACGTCTCT TGATCTTGAA GGCATTATAT TTGCCTTCTC TTAGTCCTTA CTTCTGAGTT GTCATAAAGC TCGGTATCAT GGTTTGACAG AAGCAGTTAT GATCCAGAGG ATTTATATAA
Consensus tgaact...t aaa.gt.tct tgatct..aa gg.attat.t ttgccttctc ttagt...ta .ttctg.gtt gtca.aaagc tc.gtatcat ggtttgacag aagcagttat g.......g. a.tt.tat..
1171 1297
MRPS23_CDS
MRPS23_mRN TAGGACATTA CTAAATAAAG AATTCCCTAG CTG------C TTATAAAGTA AATTTACTTT GAATTGTAAA TAACA----- -TGAAGAAAC CTTTA----T AAAGATTGTT CAAATGG-GA CTCAA
MRPS23P1 AAGAATAATA AAAACTGAAA AAAAAAGGAG TTATGTGAAC TTTCATGGTA GGACATCATT AAATAAAGAA CTCCAGCTGG GCGTGGTAGC TCATACCTGT AATCCCAGCA CTTTGGGAGG CCCAGGC
Consensus .ag.a.a.ta ..aa.t.aa. aa......ag .t.......c tt..a..gta ......c.tt .aat....aa ...ca..... ..g..g.a.c ...ta....t aa.....g.. c....gg.g. c.ca...