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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 939 Check: 0 ..
Name: MRPS25_CDS Len: 939 Check: 2304 Weight: 1.49
Name: MRPS25_mRNA Len: 939 Check: 5779 Weight: 0.75
Name: MRPS25P1 Len: 939 Check: 6228 Weight: 0.75
Name: Consensus Len: 939 Check: 4139 Weight: 0.00
//
1 130
MRPS25_CDS
MRPS25_mRN AGTGGAACCT GGCT-CTGGG GAGAAGCCGC GTGAGATCCG CGC--GG--G TGCTAGCTAG TCCTT----T CTCGTCGCTG CTCGGCTCGC GGCC-CGTGG GGTCGGCCCC
MRPS25P1 ATAAAGAAAA CAACCTCCAC AATGAAACAA AAATTCAGGG GAGATGCGGT GTGAGGTCTG CTCCAGGCCG TGGTGGGTGC TCTTTGGCTT CTCTCCTCTG CTGGGCCTGT GGCCACATGT CCCCCCGCCC
Consensus .......... .......... a.tg.aac.. ...t.c.ggg gaga.gc.g. gtgag.tc.g c.c..gg..g tg.t.g.t.. tc.tt....t ctc..c.ctg ct.ggc..g. ggcc.c.tg. ...c...ccc
131 260
MRPS25_CDS AT GCCCATGAAG GGCCGCTTCC CCATCCGCCG CACCCTGCAA TATCTGAGCC AGGGGAACGT GGTGTTCAAG GACTCCGTGA AGGTCATGAC AGTGAATTAC AACACGCATG
MRPS25_mRN GCCACCGT-- -TGCCGCCAT GCCCATGAAG GGCCGCTTCC CCATCCGCCG CACCCTGCAA TATCTGAGCC AGGGGAACGT GGTGTTCAAG GACTCCGTGA AGGTCATGAC AGTGAATTAC AACACGCATG
MRPS25P1 ACCACCGCCA CTGCCCCCAT GCCCATGAAG GGCCGCTCCC CCATC-GCCA CACCCTGCAG TACCTGAGCC AGGGGGAGGT GGTGTTCAAA GACTTGGCGA AGGTCATGAC AGTGAATTAC AAAACACATG
Consensus .ccaccg... .tgcc.ccAT GCCCATGAAG GGCCGCTtCC CCATCcGCCg CACCCTGCAa TAtCTGAGCC AGGGGaAcGT GGTGTTCAAg GACTccGtGA AGGTCATGAC AGTGAATTAC AAcACgCATG
261 390
MRPS25_CDS GGGAGCTGGG CGAGGGCGCC AGGAAGTTTG TGTTTTTCAA CATACCTCAG ATTCAATACA AAAACCCTTG GGTGCAGATC ATGATGTTTA AGAACATGAC GCCGTCACCC TTCCTG---- ------CGAT
MRPS25_mRN GGGAGCTGGG CGAGGGCGCC AGGAAGTTTG TGTTTTTCAA CATACCTCAG ATTCAATACA AAAACCCTTG GGTGCAGATC ATGATGTTTA AGAACATGAC GCCGTCACCC TTCCTG---- ------CGAT
MRPS25P1 GGGAGCTGGG TGAGGGCACC AGGAAATTTG CGTTTT-CAA CATATCTTAG ATCCAATACA AAATCCCATG AGTGCAGATC ATGATGTTTA AGGACAGGAT GCCATCATCC TTCCTGTCTC CACACCCACC
Consensus GGGAGCTGGG cGAGGGCgCC AGGAAgTTTG tGTTTTtCAA CATAcCTcAG ATtCAATACA AAAaCCCtTG gGTGCAGATC ATGATGTTTA AGaACAtGAc GCCgTCAcCC TTCCTG.... ......Cgat
391 520
MRPS25_CDS TCTACTTAGA TTCTGGGGAG CAGGTCCTGG TGGATGTGGA GACCAAGAGC AATAAGGAGA TCATGGAGCA CATCAGAAAA ATCTTGGGGA AGAATGAGGA AACCCTCAGG GAAGAGGAGG AGGAGAAAAA
MRPS25_mRN TCTACTTAGA TTCTGGGGAG CAGGTCCTGG TGGATGTGGA GACCAAGAGC AATAAGGAGA TCATGGAGCA CATCAGAAAA ATCTTGGGGA AGAATGAGGA AACCCTCAGG GAAGAGGAGG AGGAGAAAAA
MRPS25P1 AATACTTAGA TTCTGGGAAG CAAGTCCCGT TGGATGTGGA GACCAAGAAT AATAAGGAGG TCATTGAGTC CATC-GAAAA ATGTTGGGGA AGAATGAGGA AACCCCCAAG AAAGAGGAGA AGGAGAAAAA
Consensus tcTACTTAGA TTCTGGGgAG CAgGTCCtGg TGGATGTGGA GACCAAGAgc AATAAGGAGa TCATgGAGca CATCaGAAAA ATcTTGGGGA AGAATGAGGA AACCCtCAgG gAAGAGGAGg AGGAGAAAAA
521 650
MRPS25_CDS GCAGCTTTCT CACCCAGCCA ACTTCGGCCC TCGAAAGTAC TGCCTGCGGG AGTGCATCTG TGAAGTGGAA GGGCAGGTGC CCTGCCCCAG CCTGGTGCCA TTACCCAAGG AGATGAGGGG GAAGTACAAA
MRPS25_mRN GCAGCTTTCT CACCCAGCCA ACTTCGGCCC TCGAAAGTAC TGCCTGCGGG AGTGCATCTG TGAAGTGGAA GGGCAGGTGC CCTGCCCCAG CCTGGTGCCA TTACCCAAGG AGATGAGGGG GAAGTACAAA
MRPS25P1 GCAGCTGTCT CACCCAGCCC CCTTTGGCCG TGGAAAGTAC TGCCTGAAGG ATTGTACCTG CAAAGTGGAA GGACAGGTGC CCTGCCTGGG CCTGAT---- --ACCCAAGG AGATG---GG GAAGTGCAGA
Consensus GCAGCTtTCT CACCCAGCCa aCTTcGGCCc TcGAAAGTAC TGCCTGcgGG AgTGcAtCTG tgAAGTGGAA GGgCAGGTGC CCTGCCccaG CCTGgTgcca ttACCCAAGG AGATGaggGG GAAGTaCAaA
651 780
MRPS25_CDS GCCGCTCTGA AAGCCGATGC CCAGGACTAA
MRPS25_mRN GCCGCTCTGA AAGCCGATGC CCAGGACTAA GGCCCACGGT CACTGTGGGC TGGGGTGATG GTGTCTGACC AGTGGGGAGA TTGGAATGGG ATTACTTTGG CCCAGGGAAG CCCCTGGTTC TGTCCCTGGA
MRPS25P1 GCCACTGTGA AAGTCAGTAC CCAGGACTAG CACCCAGGGT CATTGTGGGC TGGGGCAATT GTGACTGACC AATAGGGAGA CTGGTATGGG GTTACCCTGG CCCCAGTAAG CCCTCGGTTC TGTCCTTGAA
Consensus GCCgCTcTGA AAGcCgaTgC CCAGGACTAa ..ccca.ggt ca.tgtgggc tgggg..at. gtg.ctgacc a.t.gggaga .tgg.atggg .ttac..tgg ccc..g.aag ccc..ggttc tgtcc.tg.a
781 910
MRPS25_CDS
MRPS25_mRN GACTCTGGAA ATCCTTTTGC ATTAAAAGGA ----CTTTAC ACACCTGTGT AAAAGGATGT GGG-AGAGGA GGGTCTGAAG CTGAGCTGCT AAATGAATAT CCCTGCTCTG CTGGTCAATA AAACGCTTCC
MRPS25P1 AACTCTGGAA ATCCTTTTGC AATAAAAGGT TCCCATTTAT ACACCTGTGT AAAAGGGCTT GGGGAGAGGA ACATCTGCAG CCGAGCTGCT AAATGCATAT CCTTGCTCCT TGGGTAAATA AAAGGCTTCC
Consensus .actctggaa atccttttgc a.taaaagg. .....ttta. acacctgtgt aaaagg...t ggg.agagga ...tctg.ag c.gagctgct aaatg.atat cc.tgctc.. ..ggt.aata aaa.gcttcc
911 939
MRPS25_CDS
MRPS25_mRN TAATAGC
MRPS25P1 CAATCAGTGC AACAAAACAG CAACAACAG
Consensus .aat...... .......... .........