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Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 739 Check: 0 ..
Name: MRPS33_CDS Len: 739 Check: 6070 Weight: 1.88
Name: MRPS33_mRNA Len: 739 Check: 2186 Weight: 0.45
Name: MRPS33P3 Len: 739 Check: 7683 Weight: 0.45
Name: MRPS33P2 Len: 739 Check: 5619 Weight: 0.88
Name: MRPS33P4 Len: 739 Check: 6033 Weight: 1.06
Name: MRPS33P1 Len: 739 Check: 7341 Weight: 1.29
Name: Consensus Len: 739 Check: 1742 Weight: 0.00
//
1 130
MRPS33_CDS ATGTCCT CCCTTTCAGA ATATGCCTTC
MRPS33_mRN GG-G ACGAGGGCGC G-TGGGTGAG GAAGGTCAG- GTCTAGGAAC TCTAACTCCT TGCCACTCAA GAAATGTCCT CCCTTTCAGA ATATGCCTTC
MRPS33P3 GGGGTA ATAGTCGCCA GCGTGAGCTA GGAGTCTG-G AAGAGGGCGC GGTAGGTGAG GAAGGTCAA- GTCCAGGAAC TCTAGCTCCT TGCCACTCAA GAAATGTCCT CCCTTTCAGA ATATGCTTTG
MRPS33P2 ACATTTACCA AACCCCGCCC TTCTTAAAAT AAAACCAG-T CACCAGGTG- --TGGGTGAG GAAAGTCAA- GTCCAGGGAC TCCAGTTCCT TGCCACTCAA GAAATGTCTT CTCTTTCAGA ATATGCCCTG
MRPS33P4 CAAATCACCA CTCAAGAACT TACTCATTTA ACCAAATA-T CACCTGTTCC CCCAAAACCT AAGGAAATA- AAACA----T TTAAAAACAA AGATAAAAGA GACATTTCTC CATTTCCAGA ATATTCCTTG
MRPS33P1 ACTGAAGACT GGAGCGCTCA GCCTGCCACG GAAGACTGGT CTGCAGCTCC CACTGCTCAG GCCACTGAAT GGGTAGGAGC AACCACTGAA TGGT-CTTAA GCTGT-TCTT GCATGGGCTC TTAAGCAACA
Consensus ........c. ........c. ..ct...... .......g.t c..c.g.t.c ....g.t.ag g....t.aa. g...agg..c ......t... tg...ct.aa g..aTgTCtt cccTttcaga aTAtgCctt.
131 260
MRPS33_CDS CGCATGTCTC GTCTCAGTGC CCGGCTATTT GGTGAAGTCA CCAGGCCTAC TAATTCCAAG TCTATGAAAG TGGTGAAACT GTTTAGTGAA CTGCCCTTGG CCAAGAAGAA GGAGACTTAT GATTGG-TAT
MRPS33_mRN CGCATGTCTC GTCTCAGTGC CCGGCTATTT GGTGAAGTCA CCAGGCCTAC TAATTCCAAG TCTATGAAAG TGGTGAAACT GTTTAGTGAA CTGCCCTTGG CCAAGAAGAA GGAGACTTAT GATTGG-TAT
MRPS33P3 CGCATGTCTC CTCTCAGTGC TCGGCTATTT TGTCAAGTCG CCAGGCCTAC TGATTCCAAG GCTATGAAAG TGGTGAAACT ATTTAGTGAA CCTCCCGTGG CCAAGAAAAA GGAAATTTAT GACTGA-TAT
MRPS33P2 CGCATGTCTC GTCTCAGTGC TCAGCTATTT GGTGAAGTCG CCAGGCCGAC TGATTCCAAG TCTATGAAAA TGGTGACACT GTTTAGTGAA CCACCCTTGG CCAAGAAGAA GGAGACTTAT GACTGGGTAT
MRPS33P4 CACATGACTT TGTTGAGGGG ACAGCAGTCT GGTGAAGTTG CCAGGCCTAT TGATTCCAAA TCCATGAAAC TGGTGAT--T ATTTAGTGAA CAGCCTTTGG CCAAGAGGAA GGAGACATGT GACTGG-CAT
MRPS33P1 TGGAAAAAT- GGTTGATGGA AAATAAATAA ACATCAGTTT CTAAAAAAAA AAAAGAAAAA ---AAGAAAG TGGTGAAACT GTTTAGTGAA CAGCCTTTGG CCAAGAAGAA G---ACTTAT GACTGG-TAT
Consensus cgcAtgtcTc gtcTcAgtGc .cagctaTtt ggtgaAGTc. CcAggcctAc taAttccAAg tctAtGAAAg TGGTGAaacT gTTTAGTGAA C.gCCcTTGG CCAAGAaGAA GgagACtTaT GAcTGG.tAT
261 390
MRPS33_CDS CCAAATCACC ACACTTAC-G CTGAACTCAT GCAGACGCTC CGATTTCTTG GACTCTACAG AGATGAGCAT CAGGATTTTA TGGATGAGCA AAAACGACTA AAGAAGCTTC GTGGAAAGGA GAAACCAAAG
MRPS33_mRN CCAAATCACC ACACTTAC-G CTGAACTCAT GCAGACGCTC CGATTTCTTG GACTCTACAG AGATGAGCAT CAGGATTTTA TGGATGAGCA AAAACGACTA AAGAAGCTTC GTGGAAAGGA GAAACCAAAG
MRPS33P3 CCAGATCACA ATACTTAATA CTGCACTCAC GGGGACACTC CAATTTCTTG GACTCTACAG AGATAAGCAT CAAGATTTTA AAGATGAGCA AAAAGGACTA AAGAAGCTTC GTGGAAAGGA GAAACCAAAG
MRPS33P2 CCAGATGACA ACACTTACT- CCACACTCAT GGGAACACTC TGGTTTCTTG GATTCTGCAG AGATGAGCAT CAGGATTTTA AGGATGAGCA AAGATGACAA AAGAAGCTTC GTGGAAAGGG GAAACCAAAG
MRPS33P4 CCAAATCACA GCACTTATTT C-GTGCTCCT GGGGATGTCG TTTTTTCTTG GTTTCTACAG AGATGAGCAT TAGGATTTTA AGGATGAGTA AAGGGGTCTA AAGAAGTGTC ATGGAAAAGG GAAACCAAGG
MRPS33P1 CCAGATTACA ATACTTATTT -TGTACTCAT GGGGACATTC TTATGCCTTG GCCTCTACAG AGATGAGCAT CAAGATTTTA AGGATGAGCC AGGC--ACGG TGGCTCATGC CTGTAATCCT AGCACTTTTG
Consensus CCAaATcACa acACTTAct. ctg.aCTCaT GgggAcgctc tgaTttCTTG GacTCTaCAG AGATGAGCAT cAgGATTTTA aGGATGAGca Aaga.gaCta aaGaagcttC gTGgAAagg. gaaACcaaaG
391 520
MRPS33_CDS AAAG--GAGA AGGGAA-AAG AGCAGCAAAA AGGAAATAG
MRPS33_mRN AAAG--GAGA AGGGAA-AAG AGCAGCAAAA AGGAAATAGT GTTGGTCCCT CAAGAGGGAG ACTTTCTTCC TCAGTGGCGG AGAGAAGAAA GTGCATTTAT TGTCTTTCCA CATATTGG-A GGAATGTCAT
MRPS33P3 AAAC--GAGA AGGGAA-AAG AGCAGCAAAA AGGAAATAGG GTCGCTCCCT CAAGAGGGAG AATTTCTTCC TCCGTGGCAG AGAGAAGAAA GTGCATTTAT TGCCTTTCCA CATATTGG-A GGAATGTCAT
MRPS33P2 AAAG--GAGA GGGGAA-AAG AGCAGCATAA AAGAAATAGT GTTGGGCCAG GCGCAG--TG GCTCACGCCT GTAATCCCAG CACTTTGGGA GGCCAAGGTG GGCGGATCAC AAGGTCAG-G AGATTGAGCC
MRPS33P4 AAAG--GAGA AGGGAAGAAA AACAGCAAAA AAGATCT-GA ATAGAGATTT CTCAAA--AG AACTCCTACA AGTGACAAGG TAAGTAGTTG CTGCCTTGCC CATATCTCCA TGGCTCACCT TGGAAGTGCC
MRPS33P1 AAGGCCGAGG TGGGTGGATC ACCTGAAGTC AGGAGTTCAA GACCAGCCTG GCCAACATGG TGAATCCCCG TCTCTACTCA AAATATAAAA ATTAGCCGGG CGTGGTGGCA GGAATCTG-- ----TAATCC
Consensus AAaG..GAGa aGGGaa.Aag AgCaGcAaaa AgGAaaTag. g....gcc.. ....a....g .....c..c. ....t..... .aa......a .t.....g.. .g......ca ....tc.g.. ....t...cc
521 650
MRPS33_CDS
MRPS33_mRN CTTCCTAAAT GAAG-TTTAT TTGGAGGAAC ACAGTCATCT C--CTTGGTG -----AAATC T-AATCCGGT TACATTGTGG CTGGTTTCTT GAAC-ACATT CTAACTGTGC AAA---ATTA TCTTGGCCTT
MRPS33P3 CTTCTGAAAT GAAG-GTTAT TTGGAGAAAC ACAATCATCT C--CTAGTTG -----AAATC T-ATTCCAGT TAAATTGTGA CTGGTTTGTT GAAC-ACATT CTAACCGTGC AAA---ACTC TTTTGGCCTT
MRPS33P2 CATCCTG--- ---G-CTAAC ATGGTGAAAC CCCATC-TCT A--CTAAAAA TACAAAAAAA T-TAGCCGGG CGTGGTGGCA CATGCCTGTA GTCCCAGCTA CTCGGGAGGC TGAGGCAGGA GCATCGCTTG
MRPS33P4 CTGCTGTTCA GAGGACCTTC CCTATGCCTG CTAATACTTT AGGCTCATTA AGGGAGAAAA TGTTGGCTGA AGGAGTGGCT CATGCCTGGA ATCCCAGCAC TTTGGGAGGC CAAGGTGGAA GGATTGCTTG
MRPS33P1 CAGCTACTTG GGAGTCTAAG GCAGGAGAAT TGCTTGAACC ---CGGGAGG CGGAGGTGGC AGTGAGTCAA GATAGCGCCA CAGCACTCCA G--CCTGGGT GATAAGAGCA AAACTCCGTC TCAAAAAAAA
Consensus c..c...... g..g.ct.a. ...g...aa. ....t...c. ...c...... .......... ..t....... ...ag.g.c. ca...ct..a g..cc.g... .....gag.. .aa....g.. ..a.......
651 739
MRPS33_CDS
MRPS33_mRN GGCCGTGTAA TGTGAGGTTT ACCTGATTCT CTAATGAAAT AAA-TACCTA AGTTATTGTT TG
MRPS33P3 GGCCGTGTAA TGTGAGGTTT ACCTAATTCT CTAATGAAGT GAA-TACATA AGCTAATATT TAATGGTTTG GGGTGGGGTG GGATGTTGG
MRPS33P2 AACCCGGAAG GCAGAGGTTG CAGTGAGACG AGATTGTGCC ACTGCACTCC AGCCTGGGTG ACAAAGCAAG ACTCCATCTC AAAAAAA
MRPS33P4 AGCCCAGTAG TTCCAGACTA GTCAGGGCAA CATGGCAAGA CCTGTTTCCA TGAAAATTAA AAATAG-TTG GCATGGT
MRPS33P1 AAGAAAG-AG AGAGAGACCA ATCTGGCCAA CAAAAAGACC ACATCTCTCA AAAAAAAAAA AAAAATTAAG G-ATAAACAA ATGTGT
Consensus a.....g.ag ...gag.... ..ctg..... c.a....a.. .c....c.ca a...a..... a.a.a....g .......... .......