Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 680 Check: 0 ..
Name: MRPS36_CDS Len: 680 Check: 9299 Weight: 1.96
Name: MRPS36_mRNA Len: 680 Check: 8720 Weight: 0.41
Name: MRPS36P1 Len: 680 Check: 1728 Weight: 0.41
Name: MRPS36P4 Len: 680 Check: 9135 Weight: 0.76
Name: MRPS36P5 Len: 680 Check: 2071 Weight: 0.97
Name: MRPS36P2 Len: 680 Check: 5907 Weight: 1.08
Name: MRPS36P3 Len: 680 Check: 8391 Weight: 1.08
Name: MRPS36P6 Len: 680 Check: 251 Weight: 1.34
Name: Consensus Len: 680 Check: 6139 Weight: 0.00
//
1 130
MRPS36_CDS ATGATGGG CAGCAAGATG GCGTCTGCTA GTAGGGTCG- -TTCAG--GT AGTCAAACCA CACACTCCAT
MRPS36_mRN CCCGGA AACTGCCCCT TCT-CGGGGG TCATGATGGG CAGCAAGATG GCGTCTGCTA GTAGGGTCG- -TTCAG--GT AGTCAAACCA CACACTCCAT
MRPS36P1 TACTTGTCAC AAATTTCATA AATTAAAAGG CAAGACTGGA AACTGCCCCT TCT-CAGGGG TGACGATTGG CAGCAAGATG GCGTCTGCCA GTAGGGTCG- -TTCAG--GT AGTCAAACCA CACACTCCAT
MRPS36P4 GAAGCATGC TGTGGCTGTA GATTAAAAAA ATATAATAGA AACTGTCCCT TCT-CGGGGG TCATGATGGG CAGCAAGATG -CATCTGCTA GCAGTGTCG- -TTCAG--GT AGTCAAGCCA CATGCTCCAT
MRPS36P5 GCATAAATCT TAAATATGGA CATTTGTGAT TAATAGAAGT ATCTCGAGCT TCT-CAGGCG TTATGATGAC TAGCAAAATG GCAACTGCCA GCAGGATGG- -TTCAG--GT ACTTAAATTA CATACTCCAT
MRPS36P2 GAGACCAGCC TGGC--CAAC ATGGTGAAAC CCCGTCTCTA CTAAA--AAT ACAAAAAAT- --TAGCTGAG CATGG--TGG GTGGTGCCT- GTAATCCCAA CTACTGGGGA GGCCGAGGCA GGAGAATCAC
MRPS36P3 TAAAGAGTC TGACATCTAT AAGCTGTAAC CACCAACATC CTTAGTGACT GCAGCAGGTC CTTTGTTGAA AAGGGATTTG GTGGCACATT GCAGTGCCCA CTACAAATGT CTTC-TGTCA CGGCCTCCTG
MRPS36P6 TT GGTTTTATAA TTTGTGTGGG AATTTAAAGG ACCTAGAACT GCAAAAATCA ACTTTAAAAA AGATCAGAGT TAGAGGACTT ACAGTACCAG ACTTTAAGAC CTACTGTTAA GCTACTATAA
Consensus .......... .g........ ....tg.... .......a.. ........ct .c...a.... ..atgatgag cagcaagatg gcg.ctgcta gcAgtgtcg. .ttcag..gt agtcaa..cA ca.actccat
131 260
MRPS36_CDS T---AATAAG GT--TTCCTG ACAGAAGAGA CAATCCTAAA C-CCAATGTA TCAGAAGCTT TGAGATCAGC AGGGCTACCA TCTCACTCTT CTGTAATTTC ACAACATTCT AAAGGAAGTA AATCACCAGA
MRPS36_mRN T---AATAAG GT--TTCCTG ACAGAAGAGA CAATCCTAAA C-CCAATGTA TCAGAAGCTT TGAGATCAGC AGGGCTACCA TCTCACTCTT CTGTAATTTC ACAACATTCT AAAGGAAGTA AATCACCAGA
MRPS36P1 T---AATAAG GT--TTCCTG ACAGAAGAGA CAATCCTAAA C-CCAATGTA TCAGAAGCTT TGAGATCAGC AGGGCTACCA TCTCACTCTT CTGTAATTTC ACAACATTCT AAGGGA--TA CATCACCAGA
MRPS36P4 T---AATAAG CT--TCCCTG CTGGAAGAGA CAATCCTAAA C-CCAATGTA CCAGAAGCTC TGAGATCAGC AGGGCAACCA TCTCACGATT CTGCAATTTC CCAGCATTCT AAGGGAAGTA AATTACTGGA
MRPS36P5 T---AATAAG GT--TCCCTG ACAGA-GAGA CCATTCTAAG C-CCAATACA TCAGAAGCTT TGAGATCAGC AGGACTATTA TCTCACTCCT CTTCAATTTC ACAG-ATTCT AAGAAAAGCA AATCACCAGC
MRPS36P2 TTCAACTCAG AAGGTAGAGG TTGCAGTGAG CCAAGATCGC A-CCACTGTA CTCCAGCCTG GGTGACAGAG CAAGACCCTG TCTCAAAAAG AAAAAAAAAA TTTGTTTCAT TTGTTTTGTT AGCCATTTTT
MRPS36P3 TTGTTGTTTG TTT-TCTCTT TTTCATTTTG TTTTTCTCTC T-TCT-GGTG CTACAAACTG AA--ACTTCA CAT----CTA TC-CAAAATG TATATGTTGA AATTTTAACC CCTAGAAGTA AATCACCAGA
MRPS36P6 T--CAAGGCA GTGTTCCTCC ACAGAAGAGG CAACCCTAAA AATCAATGAA TCA---GCTT TGGAATCAGC AGGAATACCG TC---CAGCT CTGCAGTTTC ACAGCATTCT GAGGGAAGGG AATTGCCAGA
Consensus T...aataag gt..Tccctg acagAagaga caatccTaaa c.cCaatgta tcagaagCTt tgagAtcagc agggctacca TCtcac..tt ctg.aatttc acagcattct aagggaaGta Aatcaccaga
261 390
MRPS36_CDS TTTGCTGATG TATCAGGGTC CACCAGACAC TGCAGAAATA ATAAAAACAT TACCTCAGAA ATACAGAAGG AAACTTGTGT CTCAAGAAGA AATGGAATTT ATCCAACGTG GAGGTCCTGA ATAA
MRPS36_mRN TTTGCTGATG TATCAGGGTC CACCAGACAC TGCAGAAATA ATAAAAACAT TACCTCAGAA ATACAGAAGG AAACTTGTGT CTCAAGAAGA AATGGAATTT ATCCAACGTG GAGGTCCTGA ATAACCATGG
MRPS36P1 TTTGCTAATG TATCAGGGTC CACCAGACAC TGCAGAAATA ATAAAAACAT TACCTCAGAA ATACAGAAGC AAACTTGTGT CTCAAGAAGA AATTGAATTT ATCCAATGTG GAGGTCCTGA ATAACCATGG
MRPS36P4 TTTGTGGATG TA-------- --CCAGACAC TGCAGAAGTA ATGAAAACAT TACCTCAGAA ATATAGAAGT AAACTTGTGT CTCAAGAAGA AATTGAATTT GTCCATTGTG GAGATCCAGA ATAATCACTG
MRPS36P5 TTTGCTTACA CATCAGGGTC TGCCAGACAC TGCAGAAATA ATAAAAACAC TACCTCAGAA G--------- AAATTTATGT CTCAAGAAGA AATCAAATTT ATCCAATGTG GA-------- ----------
MRPS36P2 TTTAACCACG GGAGTGGGAT GGC-AGACAA TGCAGAA-TA ATAAAAACAT TACCCTAGAA ATACAGAAGG AAACTCCTGT CTCAAGAAGA AATTGAACGT ACTCAATGTG GAGGCCCAGA ATCATCACTG
MRPS36P3 TTTGCTGACG TATCAGGGTC CACCAGACAC TGCAGAAATA ATGAAAACAT TACCTCAGAA ATACAGAA-- --ACTTGTGT CTTAAGAAGA AGTTGAATTT GTCCACTGTG AAGATCCAGA ATAATCACTG
MRPS36P6 TTGGTTGATG CAGCAGGGTC CACCAGACAC TGCAGAAATT ATTAAAT-AT TGTCTCAGAA TTATAGACGG AAATTTGTGT CTCAGGAGGA AACTGGCTGG G--CATGGTG GC-------- -TCATGCCTG
Consensus TTtgctgAtg tatcaGGGtc caCcAGACAc TGCAGAAaTa ATaAAAacAt TacCtcAGAA atacagaagg aaAcTtgTGT CTcAaGAaGA Aattgaattt atcCAatGTG gag.tcc.ga ataat..ctg
391 520
MRPS36_CDS
MRPS36_mRN TGGCTGCTGT TTGTCATCAG ACAATAGAAT TGTCTTTACA ATAAAGGACT TCCAAAA-TG ACAGATGAGA AACTGTATAT TAAACACCTT TAATAAATAT TATGAAAAAA ATG-AAATAT AGAAAATTTA
MRPS36P1 TGGTTGCTGT TTGTCATCAA ACAATAGAAT TGTCTTTACA ATAAAGGACT CCCAAAA-TG GCAGATGAGA AACTATACAT TAAACGCCTT TAATAAATAT TATGAAAAAA ATG-AAATAT AGAAAATTTA
MRPS36P4 TGGCTGCTGT TTGTCATCAG ACAAAAGAAT TACCTTTACA ATAAAGGACT TCCAAAA-A- ----AAAATA GACTGTTTTT TAGAG--CAA TTTTACTTTT AAAGAAAAAT CAA-GCAGAA AGTATGGAGA
MRPS36P5 ---CTGCTGT TTGTCATAAG ACAAAAAAAT TGTCTTTATA ATAAGTGACT TCCAAA--TG ACAAACAAGA AATTGTACAT TAAACCACAT TAATAAATAT TCTGCAAAAA AAT-AGAAAA TTTATATTTT
MRPS36P2 GGACGGCTGT TTATCATCAG AGCCAATAAT TTT-TTTACA GTAAAGGACT TCCAAAA-TG ACAAATGTGA AATTGTATGT CAAACAACTT TAATAAATGT TCTGTTAAAA AAATGTAGAA AAGATAAAAA
MRPS36P3 TGGCTGCTGT TTGTCATCAG ACAAAATAAT TACCTTTACA ATAAGGGACT TCCAAAAATA ATAATAATAA GACTGCTTTT TAGGGCAGTT T--TAGGTTT AAAGAAAAAT CAA-GCAGAA AGTATGGAGA
MRPS36P6 TAATCTCAGC ACTTTCGGAG GCTGAGGCGG GCAGATCACA AGGTCAGGAG ATCAAGACTA TCCTGGCTAA CATGGTGGAA TC-CCGTCTC TACTAAAAAT ACAAAAAAAA AAAAAAAATT AGCTGGGCAT
Consensus ...c.gctgt tt.tcat.ag ac..aa.aat t...tttaca ataa..gact tccaaaa.t. .c.......a .a.tgt...t ta..c..ct. ta.taaat.t ...g.aaaaa aaa...a.a. a..a......
521 650
MRPS36_CDS
MRPS36_mRN GATGG-ACA- ---CTTGTAT TTCCTAATTT ATGTATCTTG GTCAGCTTCT CCACAAGCTT ACCTAATTGT TTATATACTT TATACTTATT AAAGT--ATA CATTTTTAAA TG--TTA
MRPS36P1 GATGG-ACA- ---CTTGTAT TTTCTAATTT ATGTATCTTG GTCAACTTCT CCACAAGCTT ACCTAATTGT TTATATACTT TATACTTATT AAAGT--ATA CATTTCTAAA TG--TTAGCC TAT----TAA
MRPS36P4 GTTTCCATA- ---TTTCCCT CTCCTGCTAA TGGTACATTT GT----TACA ACTGATGAAT CAATGTAGGA GTGTTACATT ATTACTAACT AAAGTCCATA CTTTACATGA TGGTTAGGTC TGTGTTGTAC
MRPS36P5 TTTACATTAG AGCAGTGTAA ATCCTAATTT ATGTATTTTT GTCAGCTTCT CCACAGGTTT ACTT----GT TTATATTCTT TATACTTATT AAAGTATACA TTAAAAACAA AGAAAAGAAC GATCTCCAAA
MRPS36P2 GCATATCAG- -----AAACT TTTCCAAAAC ATTTATCCCT GGCTTCTTGG TTTCCTCCCT CCT-----GA ACTCTGAAAT TCTTGTAAGT TTGGT----G GCAG-GCATG AGTGTTACA- -CATACAGAT
MRPS36P3 GTTTCTGTA- -----TTTCC CCCCTCCCAC TAGTTTCCCC TG-GTATTAA CATCTTGCAT T-G-----GT ATGGTACATT TATTACAACT GATGA----A CCAGTGTTGG AGTGTTATAT GATTTCTAAC
MRPS36P6 GGTGGCACAC ACCTGTAGTC CCAGCTGCTC GGGAGGCTGA GGCAGGAGAA TCACTTGAAC CCA-----GG AGGCGGAGGT TGCAGTGAGC CGAGATCACG CCACTGCACC CCAGCCTG-- GGCAACAGAG
Consensus g.t.....a. .....t.... ...c...... ..gt..c... g.c...t... ...c.tg..t .c......g. .........t t.t..t.a.t ...g...... ..a....... .g........ .....c..a.
651 680
MRPS36_CDS
MRPS36_mRN
MRPS36P1 TTTACTCTTG ATTATCA
MRPS36P4 AGTTCTACCG GTTTTGAAAA
MRPS36P5 ATTGATTGCT ACAATTTAAT TTTCTCAAAT
MRPS36P2 ACACATGCAA ACAAAACAAC TTT
MRPS36P3 TAACGTCCAT ACTTTACGTT ATG
MRPS36P6 GGAGACTCCA TCTCAAAAAT A
Consensus .....t.c.. .c.....aa. ..........