Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1064 Check: 0 ..
Name: MRPS6_CDS Len: 1064 Check: 1291 Weight: 1.66
Name: MRPS6_mRNA Len: 1064 Check: 83 Weight: 0.81
Name: MRPS6P2 Len: 1064 Check: 489 Weight: 0.81
Name: MRPS6P4 Len: 1064 Check: 2024 Weight: 1.09
Name: MRPS6P1 Len: 1064 Check: 8647 Weight: 0.82
Name: MRPS6P3 Len: 1064 Check: 4505 Weight: 0.82
Name: Consensus Len: 1064 Check: 4371 Weight: 0.00
//
1 130
MRPS6_CDS
MRPS6_mRNA GCTTT CGCCGCCTGG GAGCCGTCCG GCGCAGCAGT TTCTAGGTCC CCACTGTCCC CGCCGTCCCG CCCCTTCGCG TCCCGGGAAC
MRPS6P2 CATGA- -GGGGGCCCA GGCTCATG-- -CAGCTGAAG --CATGCTTT TGCCGCCCAG GAGACGTCAG GCCCGGCCAC CTCCAGGTCC CCGCCATCCC TGCCATCCCG CCCCTTCGCG TCCTGGGAAC
MRPS6P4 ATGGCATAA- -GCTTTTCAT GACCCATG-- -AGGCTTCAG ATCCATCAAT TCCAGCAC-G TTTATGTA-- GTCCTTCTAA TCCTTATGAC CCT-TGTTCC ATAAGCCTGG CCCTCCTATC CCCCAGGAGC
MRPS6P1 CAGGAGGGAC CACCATGCCT GGCTAATTTT TAAAAATTTT TTGTAGCTTT TGCCATCCGG CAGCCATTCA GCCCAGCCAC TTCCAG---- -----GTCCC TGCCATCCTG CTCCTTTGCT TCCCGGGAAC
MRPS6P3 AGGAGGGAC CACCATGCCT GGCTAATTTT TAAAAATTTT TTGTAGCTTT TGCCATCCGG CAGCCATTCA GCCCAGCCAC TTCCAG---- -----GTCCC TGCCATCCTG CTCCTTTGCT TCCCGGGAAC
Consensus ........a. .......c.. g.c..at... .......... .....gcttt tgcc..cc.g .ag.c.t... gccc.gc.a. ttc.ag.... .....gtccc .gcc.tcc.g c.cctt.gc. tcccgggaac
131 260
MRPS6_CDS AT GCCCCGCTAC GAGCTGGCTT TAATCCTGAA AGCCATGCAG CGGCCAGAGA CTGCTGCTAC TTTGAAACGT ACGATAGAGG CCCTGATGGA
MRPS6_mRNA CGGCTGGCTT CCGAGCCGCA CTCGCCGATC CTCCAGGCAT GCCCCGCTAC GAGCTGGCTT TAATCCTGAA AGCCATGCAG CGGCCAGAGA CTGCTGCTAC TTTGAAACGT ACGATAGAGG CCCTGATGGA
MRPS6P2 CAGCTCGCTT CCGAGCCGCA CGCATCGAGC CTCCAGGCAT GCCCCGCTAT AAGCTGGCTT TAATCCTGAA AGCCATGCCG CGGCCAGA-- CTGCTGCTGC TTTGAAACAT ACGATAGAGG TTCTGATGGA
MRPS6P4 TGCCTCAGTC CTGAGCCACG TGTGATGTGC T--CAGACAT GCCCTGCTTA CTGTTGGCTT TGATTCTGAA AGCC-TACAG CTGCCAGAGA CAGCT-CT-- ---------- ---------G TCCCAATAGA
MRPS6P1 CATCCCAGTT CTGAGCCGCC CAC--CAAGC CCTTGGGAAT GCCTGGCTAT AAGCTGGCTT TAATCTTGAC AGCCATGCCG CAGCCAGAGA CTACTGCTGC TTTGAAAAGT ATGATACAAG CCCTGATGAA
MRPS6P3 CATCCCAGTT CTGAGCCGCC CAC--CAAGC CCTTGGGAAT GCCTGGCTAT AAGCTGGCTT TAATCTTGAC AGCCATGCCG CAGCCAGAGA CTACTGCTGC TTTGAAAAGT ATGATACAAG CCCTGATGAA
Consensus c..c.c..tt c.gagccgc. c.c..c.agc c....gg.AT GCCccGCTa. .aGcTGGCTT TaATccTGAa AGCCaTgCaG CgGCCAGAga CtgCTgCT.c tttgaaacgt acgatagagG ccCtgATggA
261 390
MRPS6_CDS CAGAGGAGCA ATAGTGAGGG ACTTGGAAAA CCTGGG-TGA ACGAGCGCTT CCTTATAGGA TCTCTGCCCA CAGTCAGCAG CACAACAGAG GCGGGTATTT CTTGGTGGAT TTTTATGCAC CCACCGCAGC
MRPS6_mRNA CAGAGGAGCA ATAGTGAGGG ACTTGGAAAA CCTGGG-TGA ACGAGCGCTT CCTTATAGGA TCTCTGCCCA CAGTCAGCAG CACAACAGAG GCGGGTATTT CTTGGTGGAT TTTTATGCAC CCACCGCAGC
MRPS6P2 AAAAGGAGCA ATAGTGAGGA ACTTGGAAAA CCTGGG-TGA GTGAGCGCTT CCTTGTAAGA TCTCCACCCA CAATCAGTGG CACAACAGAG GCGGGTATTT CCTGGTGAAT TTTTATGCAC CAACCACAAC
MRPS6P4 CGTGGGAGCA ATAGCGAGAA ACTTAGAAAA TCTGGCCAAA ATGAGCATTT CCTTATTAGA TCTCCATCTA CTGTCAACAG CATAATAGCA GATAATATTT CTTGGTGGAT TTTTATGCAC CAAC---ATC
MRPS6P1 CAGAGGAGCA ATAGTGAGGG ACTTGCAAAA CCTGGGCA-A ATGAGCACTT CCTTATAAGA TCTTC----- --GTCAACAG CACAGCAGAG GTGGGTATTT CTTGGTGAAT TTTTATGCAC CAACCACAAC
MRPS6P3 CAGAGGAGCA ATAGTGAGGG ACTTGCAAAA CCTGGGCA-A ATGAGCACTT CCTTATAAGA TCTTC----- --GTCAACAG CACAGCAGAG GTGGGTATTT CTTGGTGAAT TTTTATGCAC CAACCACAAC
Consensus cagaGGAGCA ATAGtGAGgg ACTTggAAAA cCTGGg.tgA atGAGCgcTT CCTTaTaaGA TCTcc.ccca cagTCAgcaG CAcAacAGag GcgggTATTT CtTGGTGgAT TTTTATGCAC CaACc.cA.C
391 520
MRPS6_CDS TGTTGAAAGC ATGGTGGAGC ACTTGTCTCG AGATATAGAT GTGATTAGAG GGAATATTGT CAAACACCCT CTGACCCAGG AACTAAAAGA ATGTGAAGGG ATTGTCCCAG TCCCACTCGC AGAAAAATTA
MRPS6_mRNA TGTTGAAAGC ATGGTGGAGC ACTTGTCTCG AGATATAGAT GTGATTAGAG GGAATATTGT CAAACACCCT CTGACCCAGG AACTAAAAGA ATGTGAAGGG ATTGTCCCAG TCCCACTCGC AGAAAAATTA
MRPS6P2 TGTTGAAAGC ATGATGGAGC ACTT--CTCC AAACGTAGAT GTGATTAGAC CGAATATTGT CAAACACCCT CTGACCCAGG AACTAAAAGA ATGTGAAGGG ATTGTCCCAA TCCCACTTAA AGGAAAATTA
MRPS6P4 TGTTGAAAGT ATAATGGAAT TTTTTTCTCA AGACATTGAT ATGATTAGAC CTAATATTGT AAACCACCTA CTAACCCAGG AAGTAAAAGA GTATAAAGGA ATTTTCCTGG TCTCACTTGA AGAAAACTTA
MRPS6P1 TGTTGAAAGC ATGATGGAGC ACTTGTCTAG AGATGTAGAT GTGATTGGAC AGAGTACTGT AAAACA---- ---TCCCAGG AACTAAAAGA ATATGAAGAG ATTGTCCTAG TCTCACTTGA AGAAAAACTG
MRPS6P3 TGTTGAAAGC ATGATGGAGC ACTTGTCTAG AGATGTAGAT GTGATTGGAC AGAGTACTGT AAAACA---- ---TCCCAGG AACTAAAAGA ATATGAAGAG ATTGTCCTAG TCTCACTTGA AGAAAAACTG
Consensus TGTTGAAAGc ATgaTGGAgc acTTgtCTcg AgAtaTaGAT gTGATTaGAc .gAaTAtTGT cAAaCAccct ctgaCCCAGG AAcTAAAAGA aTgTgAAGgg ATTgTCCcag TCcCACTtga AGaAAAatTa
521 650
MRPS6_CDS TATTCCACAA AGAAGAGGAA GAAGTGA
MRPS6_mRNA TATTCCACAA AGAAGAGGAA GAAGTGAGAA GATTCGCCAG ATTTTAGCCT TATATGTAAT TCCTT----- -CACATTTGG G--CAGCATG GACGAGAAGG AAGAATTTGC AAGTTTGGCC TT-T---ATA
MRPS6P2 TATTACACAA AGAAGAGGAA GAAGTGAGAA GATTCACCAG GAATTAGCCT TATATTTAAT CCCTT----- -CATATTTGA G--CAGCATG GATGAGAAGA AATAGTTTAC AAGCTTGGCC TT-TTATATA
MRPS6P4 TATCCCA--- ---AGAGGAA AATGTAAAAA AATTCAGCAG ATTGCATCTT TATTCTTAGT TTTCT----- -CTAACATGA A--CATCATT AAT------- -TTAGTTTAC AAATTTGACC TTCATCCGTT
MRPS6P1 TATTCCACAA AGCAGCAGCA GTGAGGGCCA GGCGCAGTGG CTCATGTCTG TAATCCCAGC ACTTTGGGAG GCCAAGGTGG GTGAATCACC TGAGGCCAGG AGTTTAAGAC CAGCCTGGCC AACATGGTGA
MRPS6P3 TATTCCACAA AGCAGCAGCA GTGAGGGCCA GGCGCAGTGG CTCATGTCTG TAATCCCAGC ACTTTGGGAG GCCAAGGTGG GTGAATCACC TGAGGCCAGG AGTTTAAGAC CAGCCTGGCC AACATGGTGA
Consensus TATtcCAcaa agaAGagGaA gaagtga..a g...ca...g .t..t..c.. ta.....a.. .c.tt..... .c..a..tg. g...a.ca.. ...g...ag. a.t.....ac .ag..tggcc ....t....a
651 780
MRPS6_CDS
MRPS6_mRNA TAA---GCAT GTGTTGCAGG TGCTGT-TTG ATTTTTCTAA GGTATTTTTA GCCCTTGATC CCCTTTGCT- TGCGAGAGGT GGGGAACTGC TCACTGACAG CTTCTCTGTA A-CCTGCAGT ACCAGTGGAT
MRPS6P2 TAA---GAGT GTATTGCAGG TGCTGT-TTG ATTTTTCTGA GATATTTTTA GCCCTTGATC CCCTTTGCT- -GCAAGAGGT GAGGAACTGC TCACTGACAG CTTCTCTGTA A-TCTGTGAT ACAAGCGGAT
MRPS6P4 TAG---GAAT GTGCCGCAGG TGCCAT-TTG AATTTTTGAT AGTATTTTTA GCTTTTGATC CCCTCTGCAG TGAGAGGGAA GTGAAACAGC TTGCTTAGAG CTGTTCTATA AATCTGTGGT ACCAGCATAT
MRPS6P1 AACCCCATCT CTAATAAAAG TACAAAATTT AGCCCAGTGT GGTGGCATGT GCCTATCATC CCAGCTACT- TGGGAGGCTA AGTCACAAGA ATGACTTGAG CCAGAGAGGT GGAAATTGAA GTGAGAAGAT
MRPS6P3 AACCC-ATCT CTAATAAAAG TACAAAATTT AGCCCAGTGT GGTGGCATGT GCCTATCATC CCAGCTACT- TGGGAGNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN NNNNNNNNNN
Consensus .a.......t .t..t..a.g t.c....tt. a......t.. ggt....t.. gcc..t.atc cc...t.ct. tg.gag.... ....a...g. ........ag c......... .......... ...ag...at
781 910
MRPS6_CDS
MRPS6_mRNA CATTCTTGAT TTTGTTTTCA TTAGTGTCAT TTCTTTGTCA TTGAGGACTT TTCCC--CTT ACAACAGTAA CACCATTTTT TGAAGAGCAA AACTTATAAT ACCTCC-TGG GATTGTGAGC TAGTCATTCA
MRPS6P2 CATTCTTGAT TTTGTTTTCA TT-------- -TCTTTGTCA GTGAGGACTT TTCCC--CTT ACAACAGTAA CACCATTCT- -GAAGAGCAA AACTTGTAAT ACCACC-TGG GATTGTGAGT TAGTCATTCA
MRPS6P4 CCTT-TTGAT TTACCTTTCA TTGCTTAAAT TTCTTTGCCA ATGAGGACTT TTGCTTTATA ACAACAGTTT CAGGAGTTTT -GTCAGGCAA CAATATCAAT ATCACCATTT TATAAAGCAA AATTTATGAA
MRPS6P1 TCACTAGATT TTAGCCTTAT ATAG----AA TTCC------ ---------- TTCAC--ATT TGAGC--AAC ATGGATGAGG AGGAATAGTT TGCAAGCTTG GCCTTTATTT AAGAGTGTGT TGCAGGTGCC
MRPS6P3 NNNNNNNNNN NNNNNNNNNN NNNN----NN NNNNNNNNNN NNNNNNNNNN TTTAT--TTT TGAACCGAGT CTCACTCTGT TGCTCAGACT GGAGTGCAGT GACATGATCT CGGCTACTGC AACCTCCGCC
Consensus .........t tt....tt.. .t........ .tc....... .......... tt......tt ..aac.g... c...at.... .g....g... .......a.t ..c....t.. .a....g.g. .a....t.c.
911 1040
MRPS6_CDS
MRPS6_mRNA GCCTGTGTAA CCATGTGGAA ATAAAAA-TT GACGACCAAT GTA-TTA--- -TATGGACAA CTTTTGCTTT GAGTAATAAA CTTGATTGTA GGGAAAAAAA AAAAAAAAAA AAAAAAAAAA AA
MRPS6P2 GACTGCATAA TCATGCAGAA ATAAAAA-TT GAAGACTAAT GTA-TTAATT ATATGGGCAA TTTTGGCTTT GA-TAATAAA CGTGATTTTA GAAATTAAAA AAAAACAGAC TGAGATAGGA CACAGATGTT
MRPS6P4 AACTGCCTTA GATTGCTAGC TAGTCAT-TC AGATTCTTTT AAGCATGCAA AAATAGACTT CTTAAAAATT GCAATAGATA TAAGATTT-- -GAATGGGAT AGTGAATGTG GTATTTTAAA CAAACATGCC
MRPS6P1 GTTTGATTTT TCTAAAATAT TTTTAGCCCA TGCTCCCCT- -TTGCTG--- CAAGAAG--T AGGGAACTGC TCACTGACAA GCTTCTCTAT CATCTGTGGT ACCAGTGGAT CATTCTTGAT TTTATTTTCA
MRPS6P3 TCTTGGGTT- -CAAGCGATT CTCTTGCCTC AGCCTCCCTA GTAGCTGGGA CTACAGG--T GTGAGCCACC ACACT---CA GCTAATTTTT TTTTTTTGGA GACAAAG--T CTTGCTCTGT CACCCAGGCT
Consensus ...tg..t.. .c..g..... .t......t. .....c.... .t...t.... ..a..g.... .t....c... .........a ..t.attt.. ....t..... a..aa..... .....t.... .a........
1041 1064
MRPS6_CDS
MRPS6_mRNA
MRPS6P2 AGAACAGGAA ATTTTAGATG ACTA
MRPS6P4 AAAA-AGTAG ATATTAAGTG GCAT
MRPS6P1 TTAGTGTCAT TTCTTTGTCA GCG
MRPS6P3 AGAATGCAG
Consensus ..a....... .......... ....