Go directly to Alignment
Multalin version 5.4.1
Copyright I.N.R.A. France 1989, 1991, 1994, 1996
Published research using this software should cite
Multiple sequence alignment with hierarchical clustering
F. CORPET, 1988, Nucl. Acids Res., 16 (22), 10881-10890
Symbol comparison table: blosum62
Gap weight: 12
Gap length weight: 2
Consensus levels: high=90% low=50%
Consensus symbols:
! is anyone of IV
$ is anyone of LM
% is anyone of FY
# is anyone of NDQEBZ
MSF: 1819 Check: 0 ..
Name: MRPS7_CDS Len: 1819 Check: 2827 Weight: 1.83
Name: MRPS7_mRNA Len: 1819 Check: 1167 Weight: 0.58
Name: MRPS7P1 Len: 1819 Check: 6497 Weight: 0.58
Name: MRPS7P2 Len: 1819 Check: 6499 Weight: 1.01
Name: Consensus Len: 1819 Check: 9110 Weight: 0.00
//
1 130
MRPS7_CDS
MRPS7_mRNA GCGA CGGATACAGG GAGGGCA--- AGGGTTTCCT TTTGGCGCT- -----TCCCT TTGGACCCCG GAGTGAAAAA CT---CTAAC GTCCAGATCA GTGGAGAGAA ACGCAGATTT
MRPS7P1 AAAA CCCCTCAATT CGAGGAAAGT GAAAGCATAC AACATTTCTC TAAATAGATA ATGTATCAAA CAAGAAACCA AAATTAAAAT TTAAACAACT GAAAAGATGA ATTATGCATC AATAAAAATA
MRPS7P2 GAGGCAGGAG GATCATGAGG TCAGGAGATC AAGATCATCC TGGCTAACAT GGTGAAACCC -TGTCTCTAC TAAAAATACA -AGAAATTAG CCAGGCGTGG TGGCAGGTGC CTGTAGTCCC AGCTACTCGG
Consensus .......... .......... .....a.a.. .a...ca... ....t..c.. .......... .....tc... ....a...c. .a...a..a. .....c.... ....ag.t.. .t...g.... a...a.....
131 260
MRPS7_CDS AT GGTTGCCCCC GCAGTGAAGG
MRPS7_mRNA AGGAC----C CTGAGGAGTC TTTTTCACCC GTTTCCCGTC ACTCGCTCAG GCGCGC--CG AGGGCAGTCC TTGTGGGGTC ------CTCG ------TGGC CAGCCAAGAT GGTTGCCCCC GCAGTGAAGG
MRPS7P1 AGAGCATTAC TTGCAGAGTC TCTGAGATAT AGCCAAAGAA GTACTCAGAG GAAAAATTCG GATACAATTA ATTTCAACTC AAGAAGCTGG AAAATTTGGC CAGCCCAGAT AGCTGTTTCC ATGGTGAAGG
MRPS7P2 GAGGCTGAGG CAGGAGAATG GCAGGAAGCC AGGAGGCGGA GCTTGCAGTG AGCCAAGATC GCATCACTGC ATTCCAGC-- ------CTGG GTGACAGAGT GAGACTTGGT --CTCAAAAA AAGAAAAAGA
Consensus ....c..... ..g..ga.t. ......a... .......g.. .....c...g .......... ....ca.t.. .t........ ......ct.g ........g. .ag.c..gaT ggtTgccccc gcagtgAAGg
261 390
MRPS7_CDS TTGCCCGAGG ATGGTCGGGC CTGGCGTTGG GCGTGCGGCG GGCTGTCTTG CAGCTTCCAG GGCTAACTCA GGTGAGATGG AGCCGCTATA GTCCTGAATT CAAGGATCCC TTGATTGACA AGGAATATTA
MRPS7_mRNA TTGCCCGAGG ATGGTCGGGC CTGGCGTTGG GCGTGCGGCG GGCTGTCTTG CAGCTTCCAG GGCTAACTCA GGTGAGATGG AGCCGCTATA GTCCTGAATT CAAGGATCCC TTGATTGACA AGGAATATTA
MRPS7P1 CTGTGCAAG- ATGGTGGGAC CTAGC-CTGG GCTTGTGGTG --CTGTCCTG TGCCT--CTG GGCTAAGTTG AGGGAGATGA TGAAACTCTG GTCCTGAATA CAGGGATACC CAGACTGACA ACAAATATTA
MRPS7P2 AAGCGTGTAA GGGGGCAGGC CT-GTGCTGG ATTTGCGGCA GACTGTCTTG CAGCTTCTAG GGCTAACTCA GGTGAGGTGG AGCTGCTAGG GTCCTGAATT CAGAGATCCC TTGATTGACA AGGAACATTA
Consensus ttGcccgagg atGGtcgGgC CTgGcgtTGG gcgTGcGGcg ggCTGTCtTG cagCTtccaG GGCTAAcTca gGtGAGaTGg aGccgCTata GTCCTGAATt CAagGATcCC ttGAtTGACA AggAAtATTA
391 520
MRPS7_CDS TCGCAAGCCA GTGGAGGAGC TAACTGAGGA GGAGAAATAT GTTCGGGAGC TCAAGAAGAC TCAGCTCATC AAAGCTGCTC CAGCAGGGAA AACAAGTTCT GTGTTTGAAG ACCCAGTCAT C-AGTAAATT
MRPS7_mRNA TCGCAAGCCA GTGGAGGAGC TAACTGAGGA GGAGAAATAT GTTCGGGAGC TCAAGAAGAC TCAGCTCATC AAAGCTGCTC CAGCAGGGAA AACAAGTTCT GTGTTTGAAG ACCCAGTCAT C-AGTAAATT
MRPS7P1 CCCCAAGCCC AAGGCCAAGC TGATCCAGAG GGCAAAGGAT GAGCTGGATC TCAGAAAGAC AC---TCATC AAAGCTGCCC CAGCCAAGAA CACAAGTTCT GTGTTGGAAG ATCCAGTGGT CCAGTGAATT
MRPS7P2 TGGCAAGCCA GTGGCTGAAG TAACTGAGGA GGAGAAGAAT GATCAGGAAC TCAAGGAGAC TCAGCTCATC AAAGCTGCTC CAACAATGAC AACGAGCTCT GTGTTTGAAG ACCCCACAAT C-AGTAAATT
Consensus tcgCAAGCCa gtGGaggAgc TaActgAGga GGagAAatAT GttCgGGAgC TCAagaAGAC tCagcTCATC AAAGCTGCtC CAgCaggGAa aACaAGtTCT GTGTTtGAAG AcCCagtcaT C.AGTaAATT
521 650
MRPS7_CDS CACCAACATG ATGATGATAG GAGGAAACAA AGTACTGGCC AGATCCCTCA TGATTCAGAC TCTGGAAGCT GTGA------ ---------- ---------- -AAAGGAAGC AGTTTGA--- ----------
MRPS7_mRNA CACCAACATG ATGATGATAG GAGGAAACAA AGTACTGGCC AGATCCCTCA TGATTCAGAC TCTGGAAGCT GTGA------ ---------- ---------- -AAAGGAAGC AGTTTGA--- ----------
MRPS7P1 CATCAACTTG ATGTTGGAAG AAGGAAGTCA AGTACAG-CC AGATCCTTCA GGACACAGAC TCAGGGAACT ATGG------ ---------- ---------- -ACAGGA-GA AGTTTGG--- ----------
MRPS7P2 CACCAACATG ATGATGAAGG GAGAAAACAA AGTACTAGCC AGATCCTTCA TGACTCAGGT TCTGGAAGCT ATGAGAAGTA CCATGATGCT TCTGCAGGGG AACAGGCAAC CATTGAACAC AACCCCTATA
Consensus CAcCAACaTG ATGaTGataG gAGgAAacaA AGTACtggCC AGATCCcTCA tGAttCAGac TCtGGaAgCT gTGa...... .......... .......... .AaAGGaagc agTTtga... ..........
651 780
MRPS7_CDS ---GAAGTAC CATGCCGCTT CTGCA----- ---------- ---------- ---------- ---------- ----GAGGAA CAG------G CAACCATCGA ACGC------ ---------- ----------
MRPS7_mRNA ---GAAGTAC CATGCCGCTT CTGCA----- ---------- ---------- ---------- ---------- ----GAGGAA CAG------G CAACCATCGA ACGC------ ---------- ----------
MRPS7P1 ---AAAGTAC CACACTGCTT CTGCA----- ---------- ---------- ---------- ---------- ----AAGGAA GGG------G CAAGTGTCCA GCCC------ ---------- ----------
MRPS7P2 CCAGAGGTCC CCAACCGTTT TGGCACCAGA AACTGGTTCC CACCGACAGG GGAGAGGGGG TTGATGGGAG AGGGGTGGAA GGGATTGATG ATTTCATCAG GCACTGGATT CTCATAAGGA GTATGCAACC
Consensus ...gAaGTaC CatgCcGcTT ctGCA..... .......... .......... .......... .......... ....gaGGAA caG......G caaccaTCga aCgC...... .......... ..........
781 910
MRPS7_CDS ---AACCCC- ---------- -TACA----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------CCAT CTT------- --CCATCAAG
MRPS7_mRNA ---AACCCC- ---------- -TACA----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------CCAT CTT------- --CCATCAAG
MRPS7P1 ---AACCCC- ---------- -CACA----- ---------- ---------- ---------- ---------- ---------- ---------- ---------- ------TCAC CTT------- --CCACCAAC
MRPS7P2 TAGATCCCCG AATGTGCAGT TTACAATAGG GTTCGTGCTT CTATGAGAAT CTAAAGTTGC TGCTGATCTG ACAGGAGGTG AAGCTCAGAC GGTAATGCTG GCTTTCTCAC CTTGCTTGCT CGCCACTCAC
Consensus ...AaCCCC. .......... .tACA..... .......... .......... .......... .......... .......... .......... .......... ......cCAt CTT....... ..CCAtcaAg
911 1040
MRPS7_CDS CAC------T GAAA------ ---------- ------AACT --------GT ---------- ---------- ---------- ---------- ---------- ---------- ---GAGCCTA TGATTGGGCT
MRPS7_mRNA CAC------T GAAA------ ---------- ------AACT --------GT -----G---- ---------- ---------- ---------- ---------- ---------- ----AGCCTA TGATTGGGCT
MRPS7P1 CAC------T GAGG------ ---------- ------AACT TTCCTGGGGT -----GCC-- ---------- ---------- ---------- ---------- ---------- ----AGCCTG GGATGGATCA
MRPS7P2 CTCCTGCTGT GTGGCCTGGT TTCTAACAGG CCATGAACCT TACCACGGGT CCATGGCCTG GGGGTTGGGA ACTCCTGCCC TACACCGTCT TCAACTAGGC AGTGAAAAAC TATGAGCCTG TGATTGGGCT
Consensus CaC......T Gaaa...... .......... ......AaCT ........GT .....g.... .......... .......... .......... .......... .......... ...gAGCCTa tGATtGggCt
1041 1170
MRPS7_CDS GGTACCCATC CTCAAGGGAG GCCGTTTCTA CCAGGTCCCT GTACCCCTAC CCGACCGGCG TCGCCGCTTC CTAGCCATGA AGTGGATGAT CACTGAGTGC CGGGATAAAA AGCACCAGCG GACAC-TGAT
MRPS7_mRNA GGTACCCATC CTCAAGGGAG GCCGTTTCTA CCAGGTCCCT GTACCCCTAC CCGACCGGCG TCGCCGCTTC CTAGCCATGA AGTGGATGAT CACTGAGTGC CGGGATAAAA AGCACCAGCG GACAC-TGAT
MRPS7P1 GGTACACACC ATCCAGG-CG GCCATTTCTA CCAAGTCCCT GTGCCCCTCG TTGACCAGC- ----CACTTC CTGGCCTTGA AGGGGATGAT TACTGACAGC CTGGACAAGG CATGGATGTG GATGCCAGAT
MRPS7P2 GATACCCATC CTCAAGGGAG GCCATTTCTC CTGGATCCCT GGATCCTCAC CCTACCAATA TCACCACTTC CTGGCCATAA AGTGGATGAT CACTAAGTGG C---ACCAGG ---GGATGCT GATGCCAG--
Consensus GgTACcCAtC cTCaAGGgaG GCCgTTTCTa CcaggTCCCT GtacCCctac ccgACCggcg tcgcCgCTTC CTaGCCaTgA AGtGGATGAT cACTgAgtGc CgggAtaAaa agcaccaGcg GAcaC.tGat
1171 1300
MRPS7_CDS GCCGGAGAAG CTGTCACACA AGCTGCTGGA GGCTTTCCAT AACCAGGGCC CCGTGATCAA GAGGAAGCAT GACTTGCACA AGATGGCAGA GGCCAACCGT GCCCTGGCCC ACTACCGCTG GTGGTAG
MRPS7_mRNA GCCGGAGAAG CTGTCACACA AGCTGCTGGA GGCTTTCCAT AACCAGGGCC CCGTGATCAA GAGGAAGCAT GACTTGCACA AGATGGCAGA GGCCAACCGT GCCCTGGCCC ACTACCGCTG GTGGTAGAGT
MRPS7P1 GTGAGGGGGG TTACTGCTAG AGCTGCTGGG ---TATCTGC AATCAGGGTC A-GTGATTAA GAGAAAGTGC CAAGTGCATG AGACATCCAA GACTA----- GTCACTGCTG GTGACAGAGG CAGATAGAGG
MRPS7P2 -CCAGAGAAG CTGTCGCATG GGCTGCTGGA GGCTTTTTGC AACCAGGGCC CCGTGATCAA GAGGAAGCAT GACATGCACA AGATGGTCAA GGCCAACCAT GCCCTGGCCC ACTACTGCTG GCGGTAGAGA
Consensus gccgGaGaaG cTgtcaCaca aGCTGCTGGa ggcTtTccat AAcCAGGGcC ccGTGATcAA GAGgAAGcat gActTGCAca AGAtggcagA GgCcAaccgt GcCctgGCcc actACcGctG gtGgTAGag.
1301 1430
MRPS7_CDS
MRPS7_mRNA CTCCAGG--- -AGGAGCCCA GGGCCCTCTG CCGCAAGAAA CAGTGTGAGC TACTGCCACG CTGAAAACTA CCTGTGGGTT AAGGATGTAG TTCCTTTGTA AGGGTGGGCA GGCCTCGTAA GAAAGATGTA
MRPS7P1 CTCCAGGGGG AAGGAGCCCA GGCCCGTCTG CCAAAGCTAA CAGTGTGAGC CACTGCCAC- -TGAAAAC-A CCTGTC--CT GAGGATGTT- ---CTTTTTA AAGG---GCA AGCTTCACAA GAACCATTGA
MRPS7P2 TTCCAGA--- -AGGAGCTCA GGGCCCTCCA CTGCAAGAAA TACTGTGAGC CACTGCCACT TCAAAAAATA GCTGTGGGTT AAGGATGTAG TTCCTTTTTA AGGGCCGGCA GGCCTCATGA GAAGGATGGA
Consensus .tccag.... .aggagc.ca gg.cc.tc.. c...a...aa .a.tgtgagc .actgccac. ...aaaa..a .ctgt....t .aggatgt.. ...cttt.ta a.gg...gca .gc.tc...a gaa..at..a
1431 1560
MRPS7_CDS
MRPS7_mRNA GCAGCATATT CACTATCCGT TAATCCTTCT TT-CTTTGAG GCTGGAACTT GCTCTCTCT- -GCCCCTATT TCCTTGTAAA GAGGGAGCAC ATTGACTTGG GAATTTCCTC CAGGAAACTC AGGGC-----
MRPS7P1 GCAATGTGTT TATTACCCAT TAATCCTTTT TTGCCTGTGG GGTAGAATTA GCTCTCCCT- -GCCCC-ATC TCCTTGCAAA GAGGAA--AC GTGGATTTAG GGATTCCTCC CAAGAAATTT AGAGCCCAAC
MRPS7P2 GCAGCATATT TATTGCCTGG TAATCCTTCT TT-CTTTGAG GCTAAAATTT GCTCTCCCTC TGTCCCCCTC TCCTTGTAAA GAGAGAGCAC ATTGTCTTGG AAACGTCGTC CAAGAAACTT AGGACCC---
Consensus gca...t.tt .a.t..c... taatcctt.t tt.c.t...g g.t..aa.t. gctctc.ct. .g.ccc..t. tccttg.aaa gag..a..ac .t.g..tt.g ..a...c..c ca.gaaa.t. ag..c.....
1561 1690
MRPS7_CDS
MRPS7_mRNA -TGTTTTCTC TTCCCTTAGG TTGGGGCGGA CCTTTGGA-C ATATAAAGGA AGCAGTTTTA --GTATCAGA AAAGATTTAT TAGAAAA--- TTCTCAC-GC TGAACTGG-T GTAGCATGTG GTGCA-----
MRPS7P1 TAGGCTTCTC TTTCTTCAGC TTGGGGTGGA CTTTCATTTC TTATGTTTTT GTTTTGTTTT --GTTTTGTT TTTGTTTTTG TTGAGACAGT TTTGCTCTGT TGCCCAGGCT GGAGTGGGTG GTGCAATCTC
MRPS7P2 -AGGCTTCTC TTCGCTCAGC TTGGGATGGA CCTTTGGATG ATATAAAAGG AAGCGGTTTT AGGTATTAGA AAAGATTTTG GACATTTGGA TGATATAAAA GGAAGCGGTT TTAGGTATTA GAAAAGATTT
Consensus ..g..ttctc tt...t.ag. ttggg..gga c.tt...... .tat...... ......ttt. ..gt.t.... ...g.ttt.. ...a...... t......... .g....gg.t ..ag....t. g...a.....
1691 1819
MRPS7_CDS
MRPS7_mRNA -GCATTCAG- TGAAACTGGC TGGAGGAAAT -AGGCTTGTT TCCAGAGTTG TCCTTATAC- -AAAATGTAT AAAAAGCAGT TTCTGGTGAA AAAAAAAAAA AAAAAAAAAA
MRPS7P1 AGCTCCCTGC AGCCTCAGCC TCCTGGGCTT CAGGCAATCC TCCCACCTCA GCCTNTCAAT TAAATAGCTG GGACCACAGG TGTGTGTCAC CATGCCTGGG TAATTATATT TTTATTTTTT GTACAAATG
MRPS7P2 ATTAGAAAAT TCTCACACTG AACTGGTATA C---CTTGTG GTACAGTACT ACCATTCACT AAAACTGT-- ------CTGG AGGGGGAAAA AAGAAAGTGT GTAGGATAGA TTGATGGAAT GGAAGG
Consensus .......... .....c.... ....gg.... ....c..... .......... .cc....a.. .aaa..g... ......c.g. .....g..a. .a........ ..a..a.a.. .......... .........