Mouse Pseudogene Annotation

GENCODE Annotation

- Data: The current manual mouse annotation is in GENCODE. .

- Description: The GENCODE annotation of pseudogenes contains models that have been created by the Human and Vertebrate Analysis and Annotation (HAVANA) team, an expert manual annotation team at the Wellcome Trust Sanger Institute. This is informed by, and checked against, computational pseudogene predictions by the PseudoPipe and RetroFinder pipelines.


PseudoPipe Output

- Data: The current PseudoPipe results are on Ensembl genome release 83. .

- Description: Genome-wide human pseudogene annotation predicted by PseudoPipe. PseudoPipe is a homology-based computational pipeline that searches a mammalian genome and identifies pseudogene sequences.

- Reference:


External Links