Comprehensive Analysis of Human Pseudogenes

Comprehensive Survey of Processed Pseudogenes in the Human Genome

Comprehensive Survey of Processed Pseudogenes in the Human Genome

We have identified ~8000 processed pseudogenes plus ~4000 duplicated pseudogenes in the latest GoldenPath human draft genome. You can either interatively search an online database (comming soon), or download the relevant data and texts from this page.

Publications on Human Pseudogenes

Zhang et al. Genome Res (2003)

Computational Results

online database
EBI human proteome set used as TBLASTN query sequences (9.7 MB) names only (0.5 MB)
Help on the file format
Processed pseudogenes
- annotations txt (1.2 MB), excel (3.0 MB), help
- nucleotide sequences (6.5 MB) help
- amino acid sequence (4.7 MB) help
- individual sequence alignment: clustal format (24.4 MB)
- multiple sequence alignment: clustal format (14.6 MB), phylip format (12.1 MB)
- multiple sequence alignment, including putative pseudogenes: clustal format (15.6 MB), phylip format (12.9 MB)
Processed pseudogenes grouped by chromosomes
Occurrences of processed pseudogenes among human proteins
- txt (0.4 MB) excel (0.8 MB) help
Putative Processed pseudogenes
- annotations (0.11 MB) help
- nucleotide sequences (0.45 MB) help
- amino acid sequence (0.33 MB) help
- individual sequence alignment: clustal format (1.7 MB)
Putative processed pseudogenes grouped by chromosomes